Browse Element(s) Details


Os.27076.1.S1_at

Description gb:AK067270.1
DB_XREF= gi:32977288
TID=Os.27076.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27076 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013098O05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013098O05, full insert sequence.
FL= gb:AK067270.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0516010/11sulfate transporter 3.4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g05130Os.11639.1.S1_at11/116+2273699..2278508Myristoyl-acyl carrier protein thioesterase, chloroplast precursor, putative, expressed
LOC_Os06g05140OsAffx.4727.1.S1_at11/116+2281573..2283864pentatricopeptide, putative
LOC_Os06g05150Os.38154.1.A1_at10/116+2284929..2285795expressed protein
LOC_Os06g05150OsAffx.15271.1.S1_at6/116+2284929..2285795expressed protein
LOC_Os06g05160Os.27076.1.S1_at10/116+2291601..2297802sulfate transporter 3.4, putative, expressed
LOC_Os06g05169NANA6+2310288..2310656NA
LOC_Os06g05180Os.46583.1.S1_s_at11/116+2319822..2328652Coatomer beta subunit, putative, expressed
LOC_Os06g05180Os.46583.2.S1_at8/116+2319822..2328652Coatomer beta subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008272biological_processsulfate transport
GO:0015116molecular_functionsulfate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27076.1.S1_at--149--7811Chr06:2292140..2292164 (25 bp)
GGTCGGCAAGACGTTCGGCTCAGAC
LOC_Os06g05160
Os.27076.1.S1_at--647--8311Chr06:2292124..2292148 (25 bp)
GGCTCAGACCGCGTGTTCTTCAGCG
LOC_Os06g05160
Os.27076.1.S1_at--1150--10271Chr06:2292038..2292062 (25 bp)
TTTGCTACCAGTAGATCCAGCAGAA
LOC_Os06g05160
Os.27076.1.S1_at--29--3711Chr06:2291846..2291870 (25 bp)
CTATGGGCTGTTAATTTGTTCGCGT
LOC_Os06g05160
Os.27076.1.S1_at--309--791Chr06:2291786..2291810 (25 bp)
ATGGGAAATAACTCCGGGTGCTGAT
LOC_Os06g05160
Os.27076.1.S1_at--593--1331Chr06:2291742..2291766 (25 bp)
AGAGTTTTTGAAGCATGTAACCAGA
LOC_Os06g05160
Os.27076.1.S1_at--665--8731Chr06:2291727..2291751 (25 bp)
TGTAACCAGAATGCGTGGCGTGTAT
LOC_Os06g05160
Os.27076.1.S1_at--39--4671Chr06:2291710..2291734 (25 bp)
GCGTGTATGGTGTAGCTTGTGATTT
LOC_Os06g05160
Os.27076.1.S1_at--487--1551Chr06:2291697..2291721 (25 bp)
AGCTTGTGATTTGGTAGTTGTTGCA
LOC_Os06g05160
Os.27076.1.S1_at--89--10091Chr06:2291619..2291643 (25 bp)
TAGGTTGTGTCCAAAACTACAGAAG
LOC_Os06g05160
Os.27076.1.S1_at--242--2151NONE
ACAGAAGTTCAGATGTCCCCTTGTC
NONE
Target Sequence 
GGTCGGCAAGACGTTCGGCTCAGACCGCGTGTTCTTCAGCGTCGCCGAGGCCGTCGCGGCGGCGCCGCACAAAACACAGC
CNTGACAAGAGCAGAGATGTGNTTTGCTACCAGTAGATCCAGCAGAAGCAGAAGTACTNTNTGACCAGCAGAAGCNCAGT
AGAACAAGGTGNTTNTCGGAGGAGGCTAATTAAAATTAAGAATNTTAAGATAGAAGCGTAGANCAAGAAGAAGAAGAAGA
AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGTGGTAAAAAACAAGTCTATGGGCTGTTAATTTGTTCGCGTG
TTGTGTTTAATTAGGGGGGATTATGGTAGTGCAGATGGGAAATAACTCCGGGTGCTGATNTNTTNTGATCGAGTTGGAAG
AGTTTTTGAAGCATGTAACCAGAATGCGTGGCGTGTATGGTGTAGCTTGTGATTTGGTAGTTGTTGCAAAGTAATCCTTA
ATGGAATCGGGTTTTGATNTAAGCCCACTCAATTGATTATTTAGGTTGTGTCCAAAACTACAGAAGTTCAGATGTCCCCT
TGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27076.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis