Browse Element(s) Details


OsAffx.4727.1.S1_at

Description tigr:9634.m00434
TID=OsAffx.4727.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0514011/11pentatricopeptide, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g05110Os.3583.1.S1_at11/116+2255855..2260001Superoxide dismutase, chloroplast, putative, expressed
LOC_Os06g05110OsAffx.4726.1.S1_at11/116+2255855..2260001Superoxide dismutase, chloroplast, putative, expressed
LOC_Os06g05120OsAffx.15270.1.S1_at9/116+2261968..2262878hypothetical protein
LOC_Os06g05120Os.46584.1.S1_x_at2/116+2261968..2262878hypothetical protein
LOC_Os06g05130Os.11639.1.S1_at11/116+2273699..2278508Myristoyl-acyl carrier protein thioesterase, chloroplast precursor, putative, expressed
LOC_Os06g05140OsAffx.4727.1.S1_at11/116+2281573..2283864pentatricopeptide, putative
LOC_Os06g05150Os.38154.1.A1_at10/116+2284929..2285795expressed protein
LOC_Os06g05150OsAffx.15271.1.S1_at6/116+2284929..2285795expressed protein
LOC_Os06g05160Os.27076.1.S1_at10/116+2291601..2297802sulfate transporter 3.4, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4727.1.S1_at--656--6431Chr06:2283345..2283369 (25 bp)
GATCATTCATGGATATGCACTCAAT
LOC_Os06g05140
OsAffx.4727.1.S1_at--697--2931Chr06:2283412..2283436 (25 bp)
AAGGCACAAGTTGATCCTGATGACA
LOC_Os06g05140
OsAffx.4727.1.S1_at--75--9691Chr06:2283437..2283461 (25 bp)
TCACATTTCTTGGTGTACTTTCCGC
LOC_Os06g05140
OsAffx.4727.1.S1_at--188--7451Chr06:2283449..2283473 (25 bp)
GTGTACTTTCCGCATGTAATCACAT
LOC_Os06g05140
OsAffx.4727.1.S1_at--194--391Chr06:2283467..2283491 (25 bp)
ATCACATGAGCCTTTTGGAGGAAGC
LOC_Os06g05140
OsAffx.4727.1.S1_at--1081--1131Chr06:2283614..2283638 (25 bp)
AGTCGATGCCATTTGAACCTGATTC
LOC_Os06g05140
OsAffx.4727.1.S1_at--582--5691Chr06:2283648..2283672 (25 bp)
GACTTCTCTATTGAGCGGTTGCAGA
LOC_Os06g05140
OsAffx.4727.1.S1_at--395--10431Chr06:2283691..2283715 (25 bp)
TTAGCAGAGCATGCGGCGAGTCAAT
LOC_Os06g05140
OsAffx.4727.1.S1_at--643--3151Chr06:2283717..2283741 (25 bp)
AATTGCCATTGATCCTTGTACTAAA
LOC_Os06g05140
OsAffx.4727.1.S1_at--330--2451Chr06:2283739..2283763 (25 bp)
AAAATGCCTTATCTGCATCTCATCA
LOC_Os06g05140
OsAffx.4727.1.S1_at--845--4971Chr06:2283753..2283777 (25 bp)
GCATCTCATCAGTGTGCATGGATTA
LOC_Os06g05140
Target Sequence 
GATCATTCATGGATATGCACTCAATAATCTTGGTCAAAATGCTGTTGAAATGTTTGAGAGTATGACAAAGGCACAAGTTG
ATCCTGATGACATCACATTTCTTGGTGTACTTTCCGCATGTAATCACATGAGCCTTTTGGAGGAAGCTAAATATTTCTTC
AATGCGATGACATGTACTTATGGAATTTTACCTAATATTATGCACTATGCTTGCATGGTTGATCTCTTTTGTAGAAAATG
CATGATTAAGGAGGCTGAAGGATTAGTGAAGTCGATGCCATTTGAACCTGATTCAGCAATATGGACTTCTCTATTGAGCG
GTTGCAGATTGACTGGCAATGATAAGTTAGCAGAGCATGCGGCGAGTCAATTAATTGCCATTGATCCTTGTACTAAAATG
CCTTATCTGCATCTCATCAGTGTGCATGGATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4727.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis