Browse Element(s) Details

Os.3583.1.S1_at

Description

gb:AB014056.1
DB_XREF= gi:4164148
GEN=iron-superoxide dismutase
TID=Os.3583.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.3583 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for iron-superoxide dismutase, complete cds.
PROD=iron-superoxide dismutase
FL= gb:AB014056.1 gb:AK062073.1 gb:AK071301.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g05110	11/11	Superoxide dismutase, chloroplast, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g05050	NA	NA	6	+	2228103..2232268	Protein kinase domain containing protein, expressed
LOC_Os06g05060	OsAffx.27460.1.S1_at	11/11	6	+	2233127..2238163	early flowering 3, putative, expressed
LOC_Os06g05060	Os.17510.1.S1_s_at	11/11	6	+	2233127..2238163	early flowering 3, putative, expressed
LOC_Os06g05060	Os.17510.1.S1_at	6/11	6	+	2233127..2238163	early flowering 3, putative, expressed
LOC_Os06g05070	Os.3581.1.A1_at	10/11	6	+	2240347..2242213	Protein kinase domain containing protein, expressed
LOC_Os06g05080	Os.8006.1.S1_at	11/11	6	+	2242766..2245729	Cytochrome c oxidase subunit Vb family protein, expressed
LOC_Os06g05090	Os.3582.1.S1_at	8/11	6	+	2246874..2249858	protein arginine N-methyltransferase family protein, putative, expressed
LOC_Os06g05100	Os.10585.1.A1_at	11/11	6	+	2249560..2255627	1-deoxy-D-xylulose-5-phosphate synthase, chloroplast precursor, putative, expressed
LOC_Os06g05100	Os.10585.1.A1_x_at	11/11	6	+	2249560..2255627	1-deoxy-D-xylulose-5-phosphate synthase, chloroplast precursor, putative, expressed
LOC_Os06g05110	Os.3583.1.S1_at	11/11	6	+	2255855..2260001	Superoxide dismutase, chloroplast, putative, expressed
LOC_Os06g05110	OsAffx.4726.1.S1_at	11/11	6	+	2255855..2260001	Superoxide dismutase, chloroplast, putative, expressed
LOC_Os06g05120	OsAffx.15270.1.S1_at	9/11	6	+	2261968..2262878	hypothetical protein
LOC_Os06g05120	Os.46584.1.S1_x_at	2/11	6	+	2261968..2262878	hypothetical protein
LOC_Os06g05130	Os.11639.1.S1_at	11/11	6	+	2273699..2278508	Myristoyl-acyl carrier protein thioesterase, chloroplast precursor, putative, expressed
LOC_Os06g05140	OsAffx.4727.1.S1_at	11/11	6	+	2281573..2283864	pentatricopeptide, putative
LOC_Os06g05150	Os.38154.1.A1_at	10/11	6	+	2284929..2285795	expressed protein
LOC_Os06g05150	OsAffx.15271.1.S1_at	6/11	6	+	2284929..2285795	expressed protein

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Gene Ontology Classification

GO id	Type	Name
GO:0007623	biological_process	circadian rhythm
GO:0009411	biological_process	response to UV
GO:0019430	biological_process	removal of superoxide radicals
GO:0046688	biological_process	response to copper ion
GO:0005739	cellular_component	mitochondrion
GO:0009507	cellular_component	chloroplast
GO:0008382	molecular_function	iron superoxide dismutase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.3583.1.S1_at--136--589	1	Chr06:2259406..2259429 (24 bp)	GAGCGACGCCGAGGAATTTCTAGAT	LOC_Os06g05110
Os.3583.1.S1_at--588--175	1	Chr06:2259479..2259503 (25 bp)	ACCTCATGTCCTGCACGGTGAAATA	LOC_Os06g05110
Os.3583.1.S1_at--966--487	1	Chr06:2259529..2259553 (25 bp)	GCTTTGGTTTTATCGTCACCTTGGA	LOC_Os06g05110
Os.3583.1.S1_at--670--691	1	Chr06:2259603..2259627 (25 bp)	GTATGGGCCATCGATCTAACTTCTT	LOC_Os06g05110
Os.3583.1.S1_at--818--59	1	Chr06:2259659..2259683 (25 bp)	ATGCTTCAGAACTAGGACCCATGGT	LOC_Os06g05110
Os.3583.1.S1_at--368--417	1	Chr06:2259676..2259700 (25 bp)	CCCATGGTCCCATTATGCTTTTTAG	LOC_Os06g05110
Os.3583.1.S1_at--265--121	1	Chr06:2259740..2259764 (25 bp)	AGTTTTTGTCTTTCTTTTGGCACAG	LOC_Os06g05110
Os.3583.1.S1_at--177--1049	1	Chr06:2259778..2259802 (25 bp)	TTAAGCCTAGCTTTGTTCCCTCTAT	LOC_Os06g05110
Os.3583.1.S1_at--691--1065	1	Chr06:2259793..2259817 (25 bp)	TTCCCTCTATTATGTAACCTGACCT	LOC_Os06g05110
Os.3583.1.S1_at--626--7	1	Chr06:2259828..2259852 (25 bp)	ATTGCTCATTCCTTTTGTCGACATT	LOC_Os06g05110
Os.3583.1.S1_at--407--463	1	Chr06:2259865..2259889 (25 bp)	GCGATATTTTCGCATCCATTACTAA	LOC_Os06g05110

Target Sequence

GAGCGACGCCGAGGAATTTCTAGATCACATGATACCTGATGCTGAGATTCGCATGCATGAGAGACACTTACACCACCTCA
TGTCCTGCACGGTGAAATAGTGGAAATCTGCTTGAGGATAAACAGCTTTGGTTTTATCGTCACCTTGGAATTTTGATATA
GCATCAAAGCAACCTTGACACTAGAGCATGATTACAGAGTATGGGCCATCGATCTAACTTCTTCTTGAAGCTGCACCACT
TCTTGCAAACGTTTATGCTTCAGAACTAGGACCCATGGTCCCATTATGCTTTTTAGATTAGATCTTCATCCTAAGTTTCG
ACAACTCATAGCTGTAGTTTTTGTCTTTCTTTTGGCACAGAATTCTGTCATTGTTAAGCCTAGCTTTGTTCCCTCTATTA
TGTAACCTGACCTTTATGTCCCCATTGCTCATTCCTTTTGTCGACATTGAATTATTTGATGCGATATTTTCGCATCCATT
ACTAA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis