Browse Element(s) Details

Os.46584.1.S1_x_at

Description

gb:AK061597.1
DB_XREF= gi:32971615
TID=Os.46584.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46584 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-024-G09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-024-G09, full insert sequence.
FL= gb:AK061597.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g05120	2/11	hypothetical protein
LOC_Os01g08300	1/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g05060	OsAffx.27460.1.S1_at	11/11	6	+	2233127..2238163	early flowering 3, putative, expressed
LOC_Os06g05060	Os.17510.1.S1_s_at	11/11	6	+	2233127..2238163	early flowering 3, putative, expressed
LOC_Os06g05060	Os.17510.1.S1_at	6/11	6	+	2233127..2238163	early flowering 3, putative, expressed
LOC_Os06g05070	Os.3581.1.A1_at	10/11	6	+	2240347..2242213	Protein kinase domain containing protein, expressed
LOC_Os06g05080	Os.8006.1.S1_at	11/11	6	+	2242766..2245729	Cytochrome c oxidase subunit Vb family protein, expressed
LOC_Os06g05090	Os.3582.1.S1_at	8/11	6	+	2246874..2249858	protein arginine N-methyltransferase family protein, putative, expressed
LOC_Os06g05100	Os.10585.1.A1_at	11/11	6	+	2249560..2255627	1-deoxy-D-xylulose-5-phosphate synthase, chloroplast precursor, putative, expressed
LOC_Os06g05100	Os.10585.1.A1_x_at	11/11	6	+	2249560..2255627	1-deoxy-D-xylulose-5-phosphate synthase, chloroplast precursor, putative, expressed
LOC_Os06g05110	Os.3583.1.S1_at	11/11	6	+	2255855..2260001	Superoxide dismutase, chloroplast, putative, expressed
LOC_Os06g05110	OsAffx.4726.1.S1_at	11/11	6	+	2255855..2260001	Superoxide dismutase, chloroplast, putative, expressed
LOC_Os06g05120	OsAffx.15270.1.S1_at	9/11	6	+	2261968..2262878	hypothetical protein
LOC_Os06g05120	Os.46584.1.S1_x_at	2/11	6	+	2261968..2262878	hypothetical protein
LOC_Os06g05130	Os.11639.1.S1_at	11/11	6	+	2273699..2278508	Myristoyl-acyl carrier protein thioesterase, chloroplast precursor, putative, expressed
LOC_Os06g05140	OsAffx.4727.1.S1_at	11/11	6	+	2281573..2283864	pentatricopeptide, putative
LOC_Os06g05150	Os.38154.1.A1_at	10/11	6	+	2284929..2285795	expressed protein
LOC_Os06g05150	OsAffx.15271.1.S1_at	6/11	6	+	2284929..2285795	expressed protein

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.46584.1.S1_x_at--951--601	1	Chr06:2262906..2262930 (25 bp)	GAGAGATCATTCTTGGTTGGCCTGA	NONE
Os.46584.1.S1_x_at--615--959	1	Chr06:2262900..2262924 (25 bp)	TCATTCTTGGTTGGCCTGATCGATC	NONE
Os.46584.1.S1_x_at--924--539	1	Chr06:2262867..2262891 (25 bp)	GAAGCTAGCCAAGATGTACAACCCT	NONE
Os.46584.1.S1_x_at--741--95	1	Chr06:2262832..2262856 (25 bp)	AGGACATGTCCTACTACGATCACTG	LOC_Os06g05120
Os.46584.1.S1_x_at--167--645	1	Chr06:2262815..2262839 (25 bp)	GATCACTGCACCAAGCGGCATGAGG	LOC_Os06g05120
Os.46584.1.S1_x_at--313--993	1	NONE	TACGCATGCATCTTCACTGCACTGT	NONE
Os.46584.1.S1_x_at--347--911	3	Chr06:2260942..2260966 (25 bp)	TGCTGCTACGAGACCTGCGAGTGCT	NONE
Os.46584.1.S1_x_at--789--911	1	Chr06:2260900..2260924 (25 bp)	TGCTGCTGCAACTAGGCTGCCATAT	NONE
Os.46584.1.S1_x_at--1100--951	1	Chr06:2260827..2260851 (25 bp)	TCTCTCTTACCCCTGAGATTTCATA	NONE
Os.46584.1.S1_x_at--1025--1041	1	Chr06:2260800..2260824 (25 bp)	TTATCAGCCCGTTGTCATCATGTAA	NONE
Os.46584.1.S1_x_at--452--47	1	Chr06:2260682..2260706 (25 bp)	ATCTGAAGTGCTTTCTATGCGTGTG	NONE

Target Sequence

GAGAGATCATTCTTGGTTGGCCTGATCGATCGAAGAGGAGAAGCTAGCCAAGATGTACAACCCTCCGGCGCAGCAGGACA
TGTCCTACTACGATCACTGCACCAAGCGGCATGAGGAGAAGGGCTGCCTCTACGCATGCATCTTCACTGCACTGTGCTGC
TTCTGCTGCTACGAGACCTGCGAGTGCTGCCTCGACTGCCTCTGCTGCTGCTGCAACTAGGCTGCCATATCAAGCCATAG
CAAGAACATGATCAAGATGAGGATGGAGATCGCCTCCATCTCTCTTACCCCTGAGATTTCATAATTTATCAGCCCGTTGT
CATCATGTAAAATTAATAAACATGTAGTAGATGGAAACTTTGTCAGAATCGAGCATTTGTGTTNTGAAAAANAGGNCTAT
TGTAANAAACCCAGAATACTGTTATCTGAAGTGCTTTCTATGCGTGTG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis