Browse Element(s) Details

Os.3582.1.S1_at

Description

gb:AK103971.1
DB_XREF= gi:32989180
TID=Os.3582.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.3582 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-016-C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-016-C05, full insert sequence.
FL= gb:AK103971.1 gb:AK073269.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g05090	8/11	protein arginine N-methyltransferase family protein, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g05040	NA	NA	6	+	2221262..2227416	retrotransposon protein, putative, unclassified
LOC_Os06g05050	NA	NA	6	+	2228103..2232268	Protein kinase domain containing protein, expressed
LOC_Os06g05060	OsAffx.27460.1.S1_at	11/11	6	+	2233127..2238163	early flowering 3, putative, expressed
LOC_Os06g05060	Os.17510.1.S1_s_at	11/11	6	+	2233127..2238163	early flowering 3, putative, expressed
LOC_Os06g05060	Os.17510.1.S1_at	6/11	6	+	2233127..2238163	early flowering 3, putative, expressed
LOC_Os06g05070	Os.3581.1.A1_at	10/11	6	+	2240347..2242213	Protein kinase domain containing protein, expressed
LOC_Os06g05080	Os.8006.1.S1_at	11/11	6	+	2242766..2245729	Cytochrome c oxidase subunit Vb family protein, expressed
LOC_Os06g05090	Os.3582.1.S1_at	8/11	6	+	2246874..2249858	protein arginine N-methyltransferase family protein, putative, expressed
LOC_Os06g05100	Os.10585.1.A1_at	11/11	6	+	2249560..2255627	1-deoxy-D-xylulose-5-phosphate synthase, chloroplast precursor, putative, expressed
LOC_Os06g05100	Os.10585.1.A1_x_at	11/11	6	+	2249560..2255627	1-deoxy-D-xylulose-5-phosphate synthase, chloroplast precursor, putative, expressed
LOC_Os06g05110	Os.3583.1.S1_at	11/11	6	+	2255855..2260001	Superoxide dismutase, chloroplast, putative, expressed
LOC_Os06g05110	OsAffx.4726.1.S1_at	11/11	6	+	2255855..2260001	Superoxide dismutase, chloroplast, putative, expressed
LOC_Os06g05120	OsAffx.15270.1.S1_at	9/11	6	+	2261968..2262878	hypothetical protein
LOC_Os06g05120	Os.46584.1.S1_x_at	2/11	6	+	2261968..2262878	hypothetical protein
LOC_Os06g05130	Os.11639.1.S1_at	11/11	6	+	2273699..2278508	Myristoyl-acyl carrier protein thioesterase, chloroplast precursor, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0008168	molecular_function	methyltransferase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.3582.1.S1_at--271--911	1	Chr06:2249223..2249247 (25 bp)	TGCTGACTCCGCCTCTGAAAGTAAA	LOC_Os06g05090
Os.3582.1.S1_at--107--1033	1	Chr06:2249268..2249292 (25 bp)	TTTCTTTCACAATGGTTCGCTCAAA	LOC_Os06g05090
Os.3582.1.S1_at--196--499	1	Chr06:2249335..2249359 (25 bp)	GCATGAGTCATCTGGCAAGCAGCTT	LOC_Os06g05090
Os.3582.1.S1_at--556--545	1	Chr06:2249596..2249620 (25 bp)	GAACGCTGACTGGATCTGATTCAAT	LOC_Os06g05090
Os.3582.1.S1_at--593--173	1	Chr06:2249645..2249669 (25 bp)	ACCATGTCTGAACCTTGCTTGATAG	LOC_Os06g05090
Os.3582.1.S1_at--99--845	1	Chr06:2249726..2249750 (25 bp)	GGCCACATTGTGTAATACTACCCAG	LOC_Os06g05090
Os.3582.1.S1_at--79--665	1	Chr06:2249806..2249830 (25 bp)	GTTGTATCAGTAATTCATCGCTCGA	LOC_Os06g05090
Os.3582.1.S1_at--613--413	1	Chr06:2249824..2249848 (25 bp)	CGCTCGATTGGTTAATTGGCTTCAT	LOC_Os06g05090
Os.3582.1.S1_at--333--883	1	Chr06:2249848..2249872 (25 bp)	TGATTGCTGTCATATGCCCATGTGT	NONE
Os.3582.1.S1_at--1084--433	1	Chr06:2249865..2249889 (25 bp)	CCATGTGTGCTCAGTCTCAAAGTCA	NONE
Os.3582.1.S1_at--622--119	1	Chr06:2249915..2249939 (25 bp)	AGTAGTTGATGCTCCCAGTTTGAGA	NONE

Target Sequence

TGCTGACTCCGCCTCTGAAAGTAAACGAAGGGGACAATGTTAAAGTTTCTTTCACAATGGTTCGCTCAAAAGAGAATCAT
CGGCTCATGGATATGGAGTTCACATATGAATTGCATGAGTCATCTGGCAAGCAGCTTCCCGCAATCNACAACCNAGATTT
ACTTAGAATAGAGCAAGAACGCTGACTGGATCTGATTCAATTGATGAAAAGATTGTGTACTGGNNACCATGTCTGAACCT
TGCTTGATAGTTGGAGCCAAGCTGAACTCCTCCCNTGGTGTATTTGGTTTTTAATAGAGGGCCTAATGGCCACATTGTGT
AATACTACCCAGAATATGTACACCGAGGCTGTGTTGTGTGAGGCATGATAAAAGTGCCAGAGATTTTGTTGTATCAGTAA
TTCATCGCTCGATTGGTTAATTGGCTTCATGATTGCTGTCATATGCCCATGTGTGCTCAGTCTCAAAGTCAAACACCTTT
CTCAACATTTTACAGGAGTAGTTGATGCTCCCAGTTTGAGA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis