Browse Element(s) Details

Os.3581.1.A1_at

Description

gb:CB666993
DB_XREF= gi:29670718
DB_XREF=OSJNEd14C02.r
CLONE=OSJNEd14C02
TID=Os.3581.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.3581 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g05070	10/11	Protein kinase domain containing protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g05030	Os.31312.5.S1_x_at	4/11	6	+	2217374..2220633	retrotransposon protein, putative, unclassified
LOC_Os06g05030	Os.31312.2.S1_x_at	4/11	6	+	2217374..2220633	retrotransposon protein, putative, unclassified
LOC_Os06g05040	NA	NA	6	+	2221262..2227416	retrotransposon protein, putative, unclassified
LOC_Os06g05050	NA	NA	6	+	2228103..2232268	Protein kinase domain containing protein, expressed
LOC_Os06g05060	OsAffx.27460.1.S1_at	11/11	6	+	2233127..2238163	early flowering 3, putative, expressed
LOC_Os06g05060	Os.17510.1.S1_s_at	11/11	6	+	2233127..2238163	early flowering 3, putative, expressed
LOC_Os06g05060	Os.17510.1.S1_at	6/11	6	+	2233127..2238163	early flowering 3, putative, expressed
LOC_Os06g05070	Os.3581.1.A1_at	10/11	6	+	2240347..2242213	Protein kinase domain containing protein, expressed
LOC_Os06g05080	Os.8006.1.S1_at	11/11	6	+	2242766..2245729	Cytochrome c oxidase subunit Vb family protein, expressed
LOC_Os06g05090	Os.3582.1.S1_at	8/11	6	+	2246874..2249858	protein arginine N-methyltransferase family protein, putative, expressed
LOC_Os06g05100	Os.10585.1.A1_at	11/11	6	+	2249560..2255627	1-deoxy-D-xylulose-5-phosphate synthase, chloroplast precursor, putative, expressed
LOC_Os06g05100	Os.10585.1.A1_x_at	11/11	6	+	2249560..2255627	1-deoxy-D-xylulose-5-phosphate synthase, chloroplast precursor, putative, expressed
LOC_Os06g05110	Os.3583.1.S1_at	11/11	6	+	2255855..2260001	Superoxide dismutase, chloroplast, putative, expressed
LOC_Os06g05110	OsAffx.4726.1.S1_at	11/11	6	+	2255855..2260001	Superoxide dismutase, chloroplast, putative, expressed
LOC_Os06g05120	OsAffx.15270.1.S1_at	9/11	6	+	2261968..2262878	hypothetical protein
LOC_Os06g05120	Os.46584.1.S1_x_at	2/11	6	+	2261968..2262878	hypothetical protein

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Gene Ontology Classification

GO id	Type	Name
GO:0016301	molecular_function	kinase activity
GO:0030246	molecular_function	carbohydrate binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.3581.1.A1_at--879--765	1	Chr06:2240774..2240798 (25 bp)	GGGATCAGCAACTCGTTCGCGCTCT	LOC_Os06g05070
Os.3581.1.A1_at--588--997	1	Chr06:2240747..2240771 (25 bp)	TACCTGTCGGGACGATGACCTCACG	LOC_Os06g05070
Os.3581.1.A1_at--443--577	1	Chr06:2240679..2240703 (25 bp)	GACGAGGTTTCTCCGAGCCCCAGTT	LOC_Os06g05070
Os.3581.1.A1_at--679--407	1	Chr06:2240666..2240690 (25 bp)	CGAGCCCCAGTTGGGTTCACGTGAA	LOC_Os06g05070
Os.3581.1.A1_at--199--263	2	Chr06:2240643..2240667 (25 bp)	AACCGTTGGATGAAGCACGTGCGGA	LOC_Os06g05070
Os.3581.1.A1_at--821--927	1	Chr06:2240582..2240606 (25 bp)	TCCGAACCCGTGTTGGGTTCACGTG	LOC_Os06g05070
Os.3581.1.A1_at--212--969	1	Chr06:2240564..2240588 (25 bp)	TCACGTGAACCGTCGGATGGAGATC	LOC_Os06g05070
Os.3581.1.A1_at--5--625	2	Chr06:2240549..2240573 (25 bp)	GATGGAGATCGTGCGGTCAATAATC	LOC_Os06g05070
Os.3581.1.A1_at--474--1077	1	NONE	TTGATTATCTTCTGGTTCCCCAGCT	NONE
Os.3581.1.A1_at--1057--313	1	Chr06:2240459..2240483 (25 bp)	AATTAGGGTTTAGATCGATGGCGAT	LOC_Os06g05070
Os.3581.1.A1_at--633--463	1	Chr06:2240439..2240463 (25 bp)	GCGATTTGATGATCGTCTGATTCAA	LOC_Os06g05070

Target Sequence

GGGATCAGCAACTCGTTCGCGCTCTCCTACCTGTCGGGACGATGACCTCACGCTCTCCGCACGGTGGCTCGCCGGAGGAG
TGACGTCACTCCGGCGACGAGGTTTCTCCGAGCCCCAGTTGGGTTCACGTGAACCGTTGGATGAAGCACGTGCGGACGAN
ATGGTGGTCGTGTGGGGTTCGGAGAAAAATTCTCCGAACCCGTGTTGGGTTCACGTGAACCGTCGGATGGAGATCGTGCG
GTCAATAATCAAACGGACGTGAGTCCAGCAACNCTATACTTGGGATTTGATTGATTATCTTCTGGTTCCCCAGCTAATTA
GGGTTTAGATCGATGGCGATTTGATGATCGTCTGATTCAA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis