Browse Element(s) Details


OsAffx.4726.1.S1_at

Description tigr:9634.m00431
TID=OsAffx.4726.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=superoxide dismutase (EC 1.15.1.1) (Fe) - rice
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0511011/11Superoxide dismutase, chloroplast, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g05050NANA6+2228103..2232268Protein kinase domain containing protein, expressed
LOC_Os06g05060OsAffx.27460.1.S1_at11/116+2233127..2238163early flowering 3, putative, expressed
LOC_Os06g05060Os.17510.1.S1_s_at11/116+2233127..2238163early flowering 3, putative, expressed
LOC_Os06g05060Os.17510.1.S1_at6/116+2233127..2238163early flowering 3, putative, expressed
LOC_Os06g05070Os.3581.1.A1_at10/116+2240347..2242213Protein kinase domain containing protein, expressed
LOC_Os06g05080Os.8006.1.S1_at11/116+2242766..2245729Cytochrome c oxidase subunit Vb family protein, expressed
LOC_Os06g05090Os.3582.1.S1_at8/116+2246874..2249858protein arginine N-methyltransferase family protein, putative, expressed
LOC_Os06g05100Os.10585.1.A1_at11/116+2249560..22556271-deoxy-D-xylulose-5-phosphate synthase, chloroplast precursor, putative, expressed
LOC_Os06g05100Os.10585.1.A1_x_at11/116+2249560..22556271-deoxy-D-xylulose-5-phosphate synthase, chloroplast precursor, putative, expressed
LOC_Os06g05110Os.3583.1.S1_at11/116+2255855..2260001Superoxide dismutase, chloroplast, putative, expressed
LOC_Os06g05110OsAffx.4726.1.S1_at11/116+2255855..2260001Superoxide dismutase, chloroplast, putative, expressed
LOC_Os06g05120OsAffx.15270.1.S1_at9/116+2261968..2262878hypothetical protein
LOC_Os06g05120Os.46584.1.S1_x_at2/116+2261968..2262878hypothetical protein
LOC_Os06g05130Os.11639.1.S1_at11/116+2273699..2278508Myristoyl-acyl carrier protein thioesterase, chloroplast precursor, putative, expressed
LOC_Os06g05140OsAffx.4727.1.S1_at11/116+2281573..2283864pentatricopeptide, putative
LOC_Os06g05150Os.38154.1.A1_at10/116+2284929..2285795expressed protein
LOC_Os06g05150OsAffx.15271.1.S1_at6/116+2284929..2285795expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007623biological_processcircadian rhythm
GO:0009411biological_processresponse to UV
GO:0019430biological_processremoval of superoxide radicals
GO:0046688biological_processresponse to copper ion
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0008382molecular_functioniron superoxide dismutase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4726.1.S1_at--209--9611Chr06:2258281..2258522 (25 bp)
TCATCATGAGCACGTGAGGCAATCA
LOC_Os06g05110
OsAffx.4726.1.S1_at--1076--1251Chr06:2258540..2258564 (25 bp)
AGATTTAAACACATGCTGCTGGGAG
LOC_Os06g05110
OsAffx.4726.1.S1_at--1020--1191Chr06:2258563..2258587 (25 bp)
AGTATCAGGGAGCATGTCGCTTGAT
LOC_Os06g05110
OsAffx.4726.1.S1_at--184--6351Chr06:2258585..2258609 (25 bp)
GATGCTGTTGCTTCGGCTGGGTTAA
LOC_Os06g05110
OsAffx.4726.1.S1_at--602--5531Chr06:2258610..2258634 (25 bp)
GAAACAGAATCAAGTGCCCTCAAAG
LOC_Os06g05110
OsAffx.4726.1.S1_at--847--3131Chr06:2258774..2258798 (25 bp)
AATTACTTCATTGTGTCCTCCTTTA
LOC_Os06g05110
OsAffx.4726.1.S1_at--1024--5571Chr06:2258816..2258840 (25 bp)
GAAAGGACCTATACAACTTGCATGC
LOC_Os06g05110
OsAffx.4726.1.S1_at--898--2511Chr06:2258830..2258854 (25 bp)
AACTTGCATGCAGGCCGCTTTAAGA
LOC_Os06g05110
OsAffx.4726.1.S1_at--86--7051Chr06:2258868..2258892 (25 bp)
GTAACTGCACTTCCACTAATACTTA
LOC_Os06g05110
OsAffx.4726.1.S1_at--424--331Chr06:2258886..2258910 (25 bp)
ATACTTATGGTCTTATGCACTTAAC
LOC_Os06g05110
OsAffx.4726.1.S1_at--359--2051Chr06:2258904..2258928 (25 bp)
ACTTAACTTAATCGACCACTCACTA
LOC_Os06g05110
Target Sequence 
TCATCATGAGCACGTGAGGCAATCAATCAAATATCGGGATTGAGATTTAAACACATGCTGCTGGGAGTATCAGGGAGCAT
GTCGCTTGATGCTGTTGCTTCGGCTGGGTTAAGAAACAGAATCAAGTGCCCTCAAAGAAACAGAAATCGACAATACATGA
TAGCATCTTATGACGAATTAGATTGAAGACCGTAGCAGACAAGTCAGTAAAATTTGGTTGCACAATCGAATCTGATTATT
AGATTGTGCACTAATGAGTATGAAGAGCTTAGTGTTAATTACTTCATTGTGTCCTCCTTTACAGATATGGTCACTAAAGA
AAGGACCTATACAACTTGCATGCAGGCCGCTTTAAGAAAATAGCTAATTTGTAACTGCACTTCCACTAATACTTATGGTC
TTATGCACTTAACTTAATCGACCACTCACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4726.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis