Browse Element(s) Details

Os.8006.1.S1_at

Description

gb:AK071423.1
DB_XREF= gi:32981446
TID=Os.8006.1
CNT=16
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.8006 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023098B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023098B10, full insert sequence.
FL= gb:AK071423.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g05080	11/11	Cytochrome c oxidase subunit Vb family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g05030	Os.31312.5.S1_x_at	4/11	6	+	2217374..2220633	retrotransposon protein, putative, unclassified
LOC_Os06g05030	Os.31312.2.S1_x_at	4/11	6	+	2217374..2220633	retrotransposon protein, putative, unclassified
LOC_Os06g05040	NA	NA	6	+	2221262..2227416	retrotransposon protein, putative, unclassified
LOC_Os06g05050	NA	NA	6	+	2228103..2232268	Protein kinase domain containing protein, expressed
LOC_Os06g05060	OsAffx.27460.1.S1_at	11/11	6	+	2233127..2238163	early flowering 3, putative, expressed
LOC_Os06g05060	Os.17510.1.S1_s_at	11/11	6	+	2233127..2238163	early flowering 3, putative, expressed
LOC_Os06g05060	Os.17510.1.S1_at	6/11	6	+	2233127..2238163	early flowering 3, putative, expressed
LOC_Os06g05070	Os.3581.1.A1_at	10/11	6	+	2240347..2242213	Protein kinase domain containing protein, expressed
LOC_Os06g05080	Os.8006.1.S1_at	11/11	6	+	2242766..2245729	Cytochrome c oxidase subunit Vb family protein, expressed
LOC_Os06g05090	Os.3582.1.S1_at	8/11	6	+	2246874..2249858	protein arginine N-methyltransferase family protein, putative, expressed
LOC_Os06g05100	Os.10585.1.A1_at	11/11	6	+	2249560..2255627	1-deoxy-D-xylulose-5-phosphate synthase, chloroplast precursor, putative, expressed
LOC_Os06g05100	Os.10585.1.A1_x_at	11/11	6	+	2249560..2255627	1-deoxy-D-xylulose-5-phosphate synthase, chloroplast precursor, putative, expressed
LOC_Os06g05110	Os.3583.1.S1_at	11/11	6	+	2255855..2260001	Superoxide dismutase, chloroplast, putative, expressed
LOC_Os06g05110	OsAffx.4726.1.S1_at	11/11	6	+	2255855..2260001	Superoxide dismutase, chloroplast, putative, expressed
LOC_Os06g05120	OsAffx.15270.1.S1_at	9/11	6	+	2261968..2262878	hypothetical protein
LOC_Os06g05120	Os.46584.1.S1_x_at	2/11	6	+	2261968..2262878	hypothetical protein

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006118	biological_process	electron transport
GO:0005739	cellular_component	mitochondrion
GO:0005740	cellular_component	mitochondrial envelope
GO:0004129	molecular_function	cytochrome-c oxidase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.8006.1.S1_at--176--541	1	Chr06:2243605..2243629 (25 bp)	GAAGCTCCAGCTGTTATTCAGTCAT	LOC_Os06g05080
Os.8006.1.S1_at--761--293	1	Chr06:2243349..2243373 (25 bp)	AAGGCAAGCCACATGAATGCCCTGT	LOC_Os06g05080
Os.8006.1.S1_at--145--67	1	Chr06:2243337..2243361 (25 bp)	ATGAATGCCCTGTCTGCACTCAGTA	LOC_Os06g05080
Os.8006.1.S1_at--441--511	1	Chr06:2243187..2243346 (25 bp)	GCACTCAGTATTTCTCGCTTGAGGT	LOC_Os06g05080
Os.8006.1.S1_at--99--57	1	Chr06:2243145..2243169 (25 bp)	ATCCTGATGGGCATGACGATGACGA	LOC_Os06g05080
Os.8006.1.S1_at--189--645	1	Chr06:2243119..2243143 (25 bp)	GATCACCACCATCATTAAGGTTGCA	LOC_Os06g05080
Os.8006.1.S1_at--574--791	1	Chr06:2243101..2243125 (25 bp)	GGTTGCAGAAGTCACCTCTAGCAAT	LOC_Os06g05080
Os.8006.1.S1_at--964--443	1	Chr06:2243060..2243084 (25 bp)	GCCATATCCATGTCAACTCTCAATT	LOC_Os06g05080
Os.8006.1.S1_at--385--1057	1	Chr06:2242935..2242959 (25 bp)	TTCTCTTTTTCAGCACACCTTAGTC	LOC_Os06g05080
Os.8006.1.S1_at--792--965	1	Chr06:2242926..2242950 (25 bp)	TCAGCACACCTTAGTCGAATTCAAA	LOC_Os06g05080
Os.8006.1.S1_at--719--895	1	Chr06:2242814..2242838 (25 bp)	TGAACATTTCACAAACCTTGGTCCT	LOC_Os06g05080

Target Sequence

GAAGCTCCAGCTGTTATTCAGTCATACTACAACAAAAGGATTGTTGGTTGTCCCGGTGGTGAAGGAGAGGACGAGCATGA
TGTCGTGTGGTTTTGGTTGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCGCTTGAGGTGATAG
GAGAAGGAGGAGATCCTGATGGGCATGACGATGACGACGATCACCACCATCATTAAGGTTGCAGAAGTCACCTCTAGCAA
TAAAAACACTGGATATGGCCATATCCATGTCAACTCTCAATTCAGATGACTTGGAGCAGCAGTGGATTTTGGAAAAACAA
AGTTTGTCTTTTTAGAGATTTGTTCATGCAAATAACAGGATTCAGTAAACAATGATATGCAATTCTCTTTTTCAGCACAC
CTTAGTCGAATTCAAAATAGGTATGTTTGTTTGTTTGTCTTGATGGATGATTCCATGTTCAATGGCCACCTGGACCATTT
ATTTTGGTGTATGATCTGTTATCTGAACATTTCACAAACCTTGGTCCT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis