Browse Element(s) Details


Os.1740.1.S1_at

Description gb:AK060356.1
DB_XREF= gi:32970374
TID=Os.1740.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.1740 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0503E05.4 (P0503E05.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-008-G11, full insert sequence.
FL= gb:AK060356.1 gb:AK059622.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2612011/11plant integral membrane protein TIGR01569 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g26060OsAffx.23402.1.S1_at10/111+14749764..14751621hypothetical protein
LOC_Os01g26070Os.51354.1.S1_at11/111+14751752..14752362expressed protein
LOC_Os01g26080OsAffx.11209.1.S1_at10/111+14760287..14761591hypothetical protein
LOC_Os01g26090OsAffx.11210.1.S1_at11/111+14768659..14769260hypothetical protein
LOC_Os01g26100OsAffx.2089.1.S1_at11/111+14770603..14770962hypothetical protein
LOC_Os01g26110OsAffx.23403.1.S1_at4/111+14774594..14775120hypothetical protein
LOC_Os01g26120Os.1740.1.S1_at11/111+14775590..14779707plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os01g26120OsAffx.11211.1.S1_at10/111+14775590..14779707plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os01g26130Os.40548.1.S1_at11/111+14781333..14786089expressed protein
LOC_Os01g26130Os.51191.1.S1_x_at11/111+14781333..14786089expressed protein
LOC_Os01g26130Os.1741.4.S1_x_at10/111+14781333..14786089expressed protein
LOC_Os01g26130Os.1741.3.A1_at8/111+14781333..14786089expressed protein
LOC_Os01g26150OsAffx.23404.2.S1_at11/111+14790276..14790956hypothetical protein
LOC_Os01g26150OsAffx.23404.1.S1_at1/111+14790276..14790956hypothetical protein
LOC_Os01g26160Os.40545.1.S1_x_at11/111+14792157..14804446HASTY, putative, expressed
LOC_Os01g26160Os.1747.3.S1_at11/111+14792157..14804446HASTY, putative, expressed
LOC_Os01g26160Os.1747.1.S1_x_at7/111+14792157..14804446HASTY, putative, expressed
LOC_Os01g26160Os.53108.1.S1_at1/111+14792157..14804446HASTY, putative, expressed
LOC_Os01g26160Os.27107.1.S1_at1/111+14792157..14804446HASTY, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1740.1.S1_at--962--10271Chr01:14779427..14779451 (25 bp)
TTTGCTTTGCATGGGTCTTCGATAT
LOC_Os01g26120
Os.1740.1.S1_at--592--8631Chr01:14779438..14779462 (25 bp)
TGGGTCTTCGATATGGATGTCATGT
LOC_Os01g26120
Os.1740.1.S1_at--829--6272Chr06:19319852..19319881 (23 bp)
GATGTCATGTGTGATTAACTGATTT
NONE
Os.1740.1.S1_at--957--6271Chr01:14779478..14779502 (25 bp)
GATGATTATATTGCGATTATTAGTC
LOC_Os01g26120
Os.1740.1.S1_at--388--7071Chr01:14779500..14779524 (25 bp)
GTCAATTAGAGGCAACAGTGGTCGT
LOC_Os01g26120
Os.1740.1.S1_at--630--931Chr01:14779509..14779533 (25 bp)
AGGCAACAGTGGTCGTTTACCTCTG
LOC_Os01g26120
Os.1740.1.S1_at--39--8571Chr01:14779518..14779542 (25 bp)
TGGTCGTTTACCTCTGTCAGTGATC
LOC_Os01g26120
Os.1740.1.S1_at--1003--3831Chr01:14779558..14779582 (25 bp)
CTGCTTGCCGTCTTAATTTAATCGT
LOC_Os01g26120
Os.1740.1.S1_at--826--10491Chr01:14779575..14779599 (25 bp)
TTAATCGTTGACATGTTCACTGAAG
LOC_Os01g26120
Os.1740.1.S1_at--223--10491Chr01:14779590..14779614 (25 bp)
TTCACTGAAGTAGTAATTGAGGCTT
LOC_Os01g26120
Os.1740.1.S1_at--1065--8871Chr01:14779607..14779631 (25 bp)
TGAGGCTTCATTTATTAGCTGTAAG
LOC_Os01g26120
Target Sequence 
TTTGCTTTGCATGGGTCTTCGATATGGATGTCATGTGTGATTAACTGATTTGATGATTATATTGCGATTATTAGTCAATT
AGAGGCAACAGTGGTCGTTTACCTCTGTCAGTGATCNCCGTGAGATGATNCCTGCTTGCCGTCTTAATTTAATCGTTGAC
ATGTTCACTGAAGTAGTAATTGAGGCTTCATTTATTAGCTGTAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1740.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis