Browse Element(s) Details


OsAffx.11210.1.S1_at

Description tigr:9629.m02534
TID=OsAffx.11210.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2609011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g26039Os.17002.1.S1_at11/111+14737314..14746988esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os01g26060OsAffx.23402.1.S1_at10/111+14749764..14751621hypothetical protein
LOC_Os01g26070Os.51354.1.S1_at11/111+14751752..14752362expressed protein
LOC_Os01g26080OsAffx.11209.1.S1_at10/111+14760287..14761591hypothetical protein
LOC_Os01g26090OsAffx.11210.1.S1_at11/111+14768659..14769260hypothetical protein
LOC_Os01g26100OsAffx.2089.1.S1_at11/111+14770603..14770962hypothetical protein
LOC_Os01g26110OsAffx.23403.1.S1_at4/111+14774594..14775120hypothetical protein
LOC_Os01g26120Os.1740.1.S1_at11/111+14775590..14779707plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os01g26120OsAffx.11211.1.S1_at10/111+14775590..14779707plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os01g26130Os.40548.1.S1_at11/111+14781333..14786089expressed protein
LOC_Os01g26130Os.51191.1.S1_x_at11/111+14781333..14786089expressed protein
LOC_Os01g26130Os.1741.4.S1_x_at10/111+14781333..14786089expressed protein
LOC_Os01g26130Os.1741.3.A1_at8/111+14781333..14786089expressed protein
LOC_Os01g26150OsAffx.23404.2.S1_at11/111+14790276..14790956hypothetical protein
LOC_Os01g26150OsAffx.23404.1.S1_at1/111+14790276..14790956hypothetical protein
LOC_Os01g26160Os.40545.1.S1_x_at11/111+14792157..14804446HASTY, putative, expressed
LOC_Os01g26160Os.1747.3.S1_at11/111+14792157..14804446HASTY, putative, expressed
LOC_Os01g26160Os.1747.1.S1_x_at7/111+14792157..14804446HASTY, putative, expressed
LOC_Os01g26160Os.53108.1.S1_at1/111+14792157..14804446HASTY, putative, expressed
LOC_Os01g26160Os.27107.1.S1_at1/111+14792157..14804446HASTY, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11210.1.S1_at--1051--6311Chr01:14768909..14768933 (25 bp)
GATGAAGTATGAGGCCCAGGTCGCA
LOC_Os01g26090
OsAffx.11210.1.S1_at--809--2831Chr01:14768913..14768937 (25 bp)
AAGTATGAGGCCCAGGTCGCATTTG
LOC_Os01g26090
OsAffx.11210.1.S1_at--417--711Chr01:14768917..14768941 (25 bp)
ATGAGGCCCAGGTCGCATTTGGGCT
LOC_Os01g26090
OsAffx.11210.1.S1_at--858--3471Chr01:14768925..14768949 (25 bp)
CAGGTCGCATTTGGGCTGCTTTTTT
LOC_Os01g26090
OsAffx.11210.1.S1_at--1106--10331Chr01:14768948..14768970 (23 bp)
TTTTTCCAAACAACCGTTCATGGAT
LOC_Os01g26090
OsAffx.11210.1.S1_at--138--3271Chr01:14768954..14769119 (25 bp)
CAAACAACCGTTCATGGATATTTGG
LOC_Os01g26090
OsAffx.11210.1.S1_at--962--6511Chr01:14769162..14769186 (25 bp)
GATATTTGGGATGCACAATTTTTCC
LOC_Os01g26090
OsAffx.11210.1.S1_at--19--8651Chr01:14769168..14769192 (25 bp)
TGGGATGCACAATTTTTCCAAAAAT
LOC_Os01g26090
OsAffx.11210.1.S1_at--677--9951Chr01:14769194..14769218 (25 bp)
TACCGTCGATTTCGTACAACCATTG
LOC_Os01g26090
OsAffx.11210.1.S1_at--122--4011Chr01:14769197..14769221 (25 bp)
CGTCGATTTCGTACAACCATTGCAC
LOC_Os01g26090
OsAffx.11210.1.S1_at--672--6531Chr01:14769201..14769225 (25 bp)
GATTTCGTACAACCATTGCACGAAA
LOC_Os01g26090
Target Sequence 
GATGAAGTATGAGGCCCAGGTCGCATTTGGGCTGCTTTTTTTTTCCAAACAACCGTTCATGGATATTTGGGATGCACAAT
TTTTCCAAAAATATACCGTCGATTTCGTACAACCATTGCACGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11210.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis