Browse Element(s) Details


Os.23667.1.A1_at

Description gb:AK069339.1
DB_XREF= gi:32979363
TID=Os.23667.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23667 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023014L08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023014L08, full insert sequence.
FL= gb:AK069339.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2588011/11dephospho-CoA kinase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g25839Os.45974.1.A1_at1/111+14634409..14642502retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g25839Os.41248.4.S1_x_at1/111+14634409..14642502retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g25839OsAffx.19337.1.S1_at1/111+14634409..14642502retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g25860NANA1+14646135..14652883retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g25880OsAffx.23396.1.S1_s_at11/111+14661787..14665907dephospho-CoA kinase family protein, expressed
LOC_Os01g25880Os.23667.1.A1_at11/111+14661787..14665907dephospho-CoA kinase family protein, expressed
LOC_Os01g25880Os.57362.1.S1_at1/111+14661787..14665907dephospho-CoA kinase family protein, expressed
LOC_Os01g25880OsAffx.23396.1.S1_at1/111+14661787..14665907dephospho-CoA kinase family protein, expressed
LOC_Os01g25890NANA1+14673295..14675091retrotransposon protein, putative, unclassified
LOC_Os01g25900NANA1+14675717..14678851retrotransposon protein, putative, unclassified
LOC_Os01g25910OsAffx.19678.1.S1_at10/111+14682241..14684550hypothetical protein
LOC_Os01g25910OsAffx.13774.1.S1_at1/111+14682241..14684550hypothetical protein
LOC_Os01g25910OsAffx.11264.1.S1_s_at1/111+14682241..14684550hypothetical protein
LOC_Os01g25910Os.27004.1.A1_at1/111+14682241..14684550hypothetical protein
LOC_Os01g25920Os.11829.1.S2_at11/111+14685138..14688095hypothetical protein
LOC_Os01g25920Os.11829.1.S1_at10/111+14685138..14688095hypothetical protein
LOC_Os01g25920Os.38368.1.S1_s_at1/111+14685138..14688095hypothetical protein
LOC_Os01g25920OsAffx.18868.5.S1_x_at1/111+14685138..14688095hypothetical protein
LOC_Os01g25920Os.11706.1.S1_x_at1/111+14685138..14688095hypothetical protein
LOC_Os01g25930NANA1+14690301..14691545transposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0015937biological_processcoenzyme A biosynthesis
GO:0004140molecular_functiondephospho-CoA kinase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23667.1.A1_at--370--10371Chr01:14662089..14662113 (25 bp)
TTTTCTCCGTTGTGGTATGTACAGC
LOC_Os01g25880
Os.23667.1.A1_at--1113--9471Chr01:14662055..14662079 (25 bp)
TCTGCTTGCCCAGAAGAATCTGCTA
LOC_Os01g25880
Os.23667.1.A1_at--623--10151Chr01:14662023..14662047 (25 bp)
TATCTTTATGTGCTTAGGTCAGGGA
LOC_Os01g25880
Os.23667.1.A1_at--721--5571Chr01:14661993..14662017 (25 bp)
GAAATGTCAATCCAACCTTGCTAGG
LOC_Os01g25880
Os.23667.1.A1_at--137--7091Chr01:14661964..14661988 (25 bp)
GTCAAGATTACAGTCCTTCATATGT
LOC_Os01g25880
Os.23667.1.A1_at--160--1291Chr01:14661918..14661942 (25 bp)
AGATCTGCACTGGTGTCTTGCAACA
LOC_Os01g25880
Os.23667.1.A1_at--1126--5531Chr01:14661887..14661911 (25 bp)
GAAACTTGGAATGTACACTGCATAA
LOC_Os01g25880
Os.23667.1.A1_at--136--6771Chr01:14661857..14661881 (25 bp)
GTTACATTCTAATCCTTTCTGTCGC
LOC_Os01g25880
Os.23667.1.A1_at--985--3671Chr01:14661843..14661867 (25 bp)
CTTTCTGTCGCTAGGGATTTCTTGA
LOC_Os01g25880
Os.23667.1.A1_at--916--10011Chr01:14661804..14661828 (25 bp)
TAGTTGTGGGCTGTGACTCTTGGAT
LOC_Os01g25880
Os.23667.1.A1_at--754--2011Chr01:14661789..14661813 (25 bp)
ACTCTTGGATGCAGGCCTCACTTGA
LOC_Os01g25880
Target Sequence 
TTTTCTCCGTTGTGGTATGTACAGCAGTGGGGGTTCTGCTTGCCCAGAAGAATCTGCTATGATCTTTATCTTTATGTGCT
TAGGTCAGGGAGGATTGAAATGTCAATCCAACCTTGCTAGGTATAGTCAAGATTACAGTCCTTCATATGTTTTGTTTTTT
CTGTTAGTTAAAGATCTGCACTGGTGTCTTGCAACAGTTGATGAAACTTGGAATGTACACTGCATAATTGAGGTTACATT
CTAATCCTTTCTGTCGCTAGGGATTTCTTGAGGAGTGGATGGATATAGTTGTGGGCTGTGACTCTTGGATGCAGGCCTCA
CTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23667.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis