Browse Element(s) Details


OsAffx.11264.1.S1_s_at

Description gb:NM_189145.1
DB_XREF= gi:34905373
GEN=OJ1126_G08.17
TID=OsAffx.11264.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1126_G08.17 (OJ1126_G08.17), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3128011/11hypothetical protein
LOC_Os05g114003/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g284501/11hypothetical protein
LOC_Os01g259101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g31250NANA1+17418308..17419549retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g31260NANA1+17420345..17423747retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g31270OsAffx.21980.2.S1_s_at11/111+17432370..17437076Annexin-like protein RJ4, putative
LOC_Os01g31270OsAffx.21980.2.S1_at10/111+17432370..17437076Annexin-like protein RJ4, putative
LOC_Os01g31270OsAffx.21980.1.S1_at10/111+17432370..17437076Annexin-like protein RJ4, putative
LOC_Os01g31270OsAffx.11264.1.S1_at7/111+17432370..17437076Annexin-like protein RJ4, putative
LOC_Os01g31280OsAffx.11264.1.S1_s_at11/111+17439546..17440105hypothetical protein
LOC_Os01g31280OsAffx.11264.1.S1_at1/111+17439546..17440105hypothetical protein
LOC_Os01g31290OsAffx.1196.1.S1_at2/111+17442914..17443447hypothetical protein
LOC_Os01g31290OsAffx.1196.1.S1_x_at2/111+17442914..17443447hypothetical protein
LOC_Os01g31300OsAffx.25367.1.S1_at1/111+17447916..17449938retrotransposon, putative, centromere-specific
LOC_Os01g31300Os.54774.1.S1_at1/111+17447916..17449938retrotransposon, putative, centromere-specific
LOC_Os01g31300Os.54774.1.S1_x_at1/111+17447916..17449938retrotransposon, putative, centromere-specific
LOC_Os01g31310NANA1+17462535..17463156hypothetical protein
LOC_Os01g31320NANA1+17463793..17464293Transposable element protein, putative, Retrotrans_gag

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11264.1.S1_s_at--539--6971Chr01:17440040..17440064 (25 bp)
GTACCAGAAGAGACATGACAAACAA
LOC_Os01g31280
OsAffx.11264.1.S1_s_at--686--9651Chr01:17440002..17440026 (25 bp)
TCAGAATTTTAGACATCACCGAGAT
LOC_Os01g31280
OsAffx.11264.1.S1_s_at--71--7411Chr01:17439934..17439958 (25 bp)
GTGATAAGTTTGATCCTCATTGGAG
LOC_Os01g31280
OsAffx.11264.1.S1_s_at--389--8056Chr05:6421431..6421509 (25 bp)
GGAGAAAACACACCCGGCATACAAG
LOC_Os05g11400
OsAffx.11264.1.S1_s_at--717--8251Chr01:17439708..17439732 (25 bp)
GGCATACAAGGAAACACACCTCCGG
LOC_Os01g31280
OsAffx.11264.1.S1_s_at--298--7571Chr01:17439655..17439679 (25 bp)
GGGCCCACAAGTCAGGTGATACTGC
LOC_Os01g31280
OsAffx.11264.1.S1_s_at--302--2851Chr01:17439647..17439671 (25 bp)
AAGTCAGGTGATACTGCCACGGAAT
LOC_Os01g31280
OsAffx.11264.1.S1_s_at--368--4414Chr12:10699077..10699096 (20 bp)
GCCACGGAATGGGTCATAACTGTCA
NONE
OsAffx.11264.1.S1_s_at--27--7135Chr12:10699084..10699108 (25 bp)
GTCATAACTGTCATAACCGCCATCA
NONE
OsAffx.11264.1.S1_s_at--535--4431Chr01:17439602..17439626 (25 bp)
GCCATCAGGGCCAACCAGTCAGTGT
LOC_Os01g31280
OsAffx.11264.1.S1_s_at--945--1134Chr12:10699118..10699142 (25 bp)
AGTCAGTGTCCCTGCCAAAGGAGAG
NONE
Target Sequence 
GTACCAGAAGAGACATGACAAACAAGTTCAGAGGAATTTCAGAATTTTAGACATCACCGAGATGATAGATATTATCAAGG
TGATCAGGATGAAGAATATTGTCAAGGTGATAAGTTTGATCCTCATTGGAGTTGGATTATTACTAATCAATTCCACTAGT
GTTGGTGAAATATGTGTATGCAAGTATTTTAAGGAGAAAACACACCCGGCATACAAGGAAACACACCTCCGGCCAATCAG
ACGCAAGTACACGGATTGGAGGGCCCACAAGTCAGGTGATACTGCCACGGAATGGGTCATAACTGTCATAACCGCCATCA
GGGCCAACCAGTCAGTGTCCCTGCCAAAGGAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11264.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis