Browse Element(s) Details


OsAffx.19678.1.S1_at

Description tigr:9629.m02516
TID=OsAffx.19678.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2591010/11hypothetical protein
LOC_Os06g321401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g319901/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g25880OsAffx.23396.1.S1_s_at11/111+14661787..14665907dephospho-CoA kinase family protein, expressed
LOC_Os01g25880Os.23667.1.A1_at11/111+14661787..14665907dephospho-CoA kinase family protein, expressed
LOC_Os01g25880Os.57362.1.S1_at1/111+14661787..14665907dephospho-CoA kinase family protein, expressed
LOC_Os01g25880OsAffx.23396.1.S1_at1/111+14661787..14665907dephospho-CoA kinase family protein, expressed
LOC_Os01g25890NANA1+14673295..14675091retrotransposon protein, putative, unclassified
LOC_Os01g25900NANA1+14675717..14678851retrotransposon protein, putative, unclassified
LOC_Os01g25910OsAffx.19678.1.S1_at10/111+14682241..14684550hypothetical protein
LOC_Os01g25910OsAffx.13774.1.S1_at1/111+14682241..14684550hypothetical protein
LOC_Os01g25910OsAffx.11264.1.S1_s_at1/111+14682241..14684550hypothetical protein
LOC_Os01g25910Os.27004.1.A1_at1/111+14682241..14684550hypothetical protein
LOC_Os01g25920Os.11829.1.S2_at11/111+14685138..14688095hypothetical protein
LOC_Os01g25920Os.11829.1.S1_at10/111+14685138..14688095hypothetical protein
LOC_Os01g25920Os.38368.1.S1_s_at1/111+14685138..14688095hypothetical protein
LOC_Os01g25920OsAffx.18868.5.S1_x_at1/111+14685138..14688095hypothetical protein
LOC_Os01g25920Os.11706.1.S1_x_at1/111+14685138..14688095hypothetical protein
LOC_Os01g25930NANA1+14690301..14691545transposon protein, putative, unclassified
LOC_Os01g25940NANA1+14695953..14696432hypothetical protein
LOC_Os01g25950Os.53142.1.S1_at3/111+14698069..14700868retrotransposon protein, putative, unclassified
LOC_Os01g25960OsAffx.27924.1.S1_at2/111+14703918..14707124retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g25960OsAffx.26951.1.S1_at1/111+14703918..14707124retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g25970NANA1+14708286..14709464retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19678.1.S1_at--443--8411NONE
GGCCCACAAATCAGGTGGAGTGCTA
NONE
OsAffx.19678.1.S1_at--184--90943Chr12:13337864..13337888 (25 bp)
TGCTACAGCGGTATTCCGTGCGCTT
NONE
OsAffx.19678.1.S1_at--382--46737Chr12:13974296..13974320 (25 bp)
GCGGTATTCCGTGCGCTTGTGGATT
NONE
OsAffx.19678.1.S1_at--803--173Chr10:9313244..9313268 (25 bp)
ATTTATCTGTGGTCGTAAGGAATAC
NONE
OsAffx.19678.1.S1_at--488--9771Chr01:14683773..14683797 (25 bp)
TAAGGAATACCAACACTCGCCACTG
LOC_Os01g25910
OsAffx.19678.1.S1_at--864--3471Chr01:14683847..14683871 (25 bp)
CATGCGTCAGAACAAGCCGTGACTT
LOC_Os01g25910
OsAffx.19678.1.S1_at--1089--2451Chr01:14683857..14683881 (25 bp)
AACAAGCCGTGACTTCAGGACATGC
LOC_Os01g25910
OsAffx.19678.1.S1_at--691--1691Chr01:14684035..14684059 (25 bp)
AGCCAGCGTGCTTCGTCGGGCAGCC
LOC_Os01g25910
OsAffx.19678.1.S1_at--213--9971Chr01:14684137..14684161 (25 bp)
TACCTGCACAGACGTCGCAAGCGAT
LOC_Os01g25910
OsAffx.19678.1.S1_at--543--2471Chr01:14684229..14684499 (25 bp)
AACACTTCAGCCTGTTTCCTGTCAC
LOC_Os01g25910
OsAffx.19678.1.S1_at--367--9651Chr01:14684496..14684520 (25 bp)
TCACTACCTGCCTGTTGTGACGAAA
LOC_Os01g25910
Target Sequence 
GGCCCACAAATCAGGTGGAGTGCTACAGCGGTATTCCGTGCGCTTGTGGATTTATCTGTGGTCGTAAGGAATACCAACAC
TCGCCACTGCACAAGTCAACTCCAACCTCGAAGCGCAAGCCGAAGCTGACATGGAGGCCATGCGTCAGAACAAGCCGTGA
CTTCAGGACATGCTTCGTCAGATGCAAGAGCAACAGCAGGCATACGAAGCGGCCCGACAAGCCAAGGCCACCTCGGCGCC
CATTCTCCAGGACTCGGCGGGCTACATCCCACCCCAAGTCTACCCGCAAGCGCCGATCCAGGTCCTTCCGCCACAAGTCA
TGCAAGAGCCAGCGTGCTTCGTCGGGCAGCCTTCGGCCGCAACCATACGCCCAACCCCTCATGTACATGCACAAGTTCGG
CCGGTCGCTGCCCAAGCACATCCCCCACTACCTGCACAGACGTCGCAAGCGATGGCGGAAGGAGCTTCGGCCCTGCAAGC
GCAGCTCCAAGCTTTCCTTCAGCAACTCAACCAACCCCACAACACTTCAGCCTGTTTCCTGTCACTACCTGCCTGTTGTG
ACGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19678.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis