Browse Element(s) Details


OsAffx.3922.1.S1_at

Description tigr:9632.m02623
TID=OsAffx.3922.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2782011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g27770OsAffx.3921.1.S1_x_at11/114+16226562..16227224hypothetical protein
LOC_Os04g27790Os.51227.1.S1_s_at11/114+16232567..16237486Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os04g27790Os.50417.1.S1_at11/114+16232567..16237486Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os04g27790Os.51227.1.S1_x_at10/114+16232567..16237486Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os04g27790OsAffx.30980.1.S1_x_at1/114+16232567..16237486Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os04g27800Os.11829.1.S1_at3/114+16239598..16241515expressed protein
LOC_Os04g27810NANA4+16244655..16245116hypothetical protein
LOC_Os04g27820OsAffx.3922.1.S1_at11/114+16249016..16250792hypothetical protein
LOC_Os04g27820Os.57335.1.S1_at1/114+16249016..16250792hypothetical protein
LOC_Os04g27830OsAffx.14006.1.S1_at10/114+16254706..162587351,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase, putative
LOC_Os04g27840OsAffx.14007.1.S1_at10/114+16260055..16261902hypothetical protein
LOC_Os04g27850Os.52050.1.S1_at11/114+16262106..16269126oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os04g27860NANA4+16270647..1627185440S ribosomal protein S27, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3922.1.S1_at--322--811Chr04:16249864..16249888 (25 bp)
ATGGGATGCCCTACCAGATCCAATG
LOC_Os04g27820
OsAffx.3922.1.S1_at--1157--9971Chr04:16249875..16249899 (25 bp)
TACCAGATCCAATGCCTGGGCGTTG
LOC_Os04g27820
OsAffx.3922.1.S1_at--213--4291Chr04:16249901..16249925 (25 bp)
CCTCTACACCCTTGGTAGTGGCAAA
LOC_Os04g27820
OsAffx.3922.1.S1_at--1100--5131Chr04:16249921..16249945 (25 bp)
GCAAAAATGTCATGCGCCACAACTG
LOC_Os04g27820
OsAffx.3922.1.S1_at--403--9811Chr04:16249972..16249996 (25 bp)
TAACGCCAAGTCTGACCGCATCTAC
LOC_Os04g27820
OsAffx.3922.1.S1_at--749--1711Chr04:16249998..16250022 (25 bp)
ACCACTGTCCTGAGCCGTGGAGATG
LOC_Os04g27820
OsAffx.3922.1.S1_at--460--9551Chr04:16250035..16250346 (25 bp)
TCTTTGGATGGGTCCCTGGATCCAA
LOC_Os04g27820
OsAffx.3922.1.S1_at--1049--2391Chr04:16250345..16250369 (25 bp)
AAACACCACCAGAAAGAGCCCATCA
LOC_Os04g27820
OsAffx.3922.1.S1_at--452--2331Chr04:16250357..16250381 (25 bp)
AAAGAGCCCATCACCACCGTCTTTG
LOC_Os04g27820
OsAffx.3922.1.S1_at--202--7151Chr04:16250375..16250399 (25 bp)
GTCTTTGCACTCACTTGGAACTTCG
LOC_Os04g27820
OsAffx.3922.1.S1_at--467--2011Chr04:16250383..16250407 (25 bp)
ACTCACTTGGAACTTCGGCAGCGGC
LOC_Os04g27820
Target Sequence 
ATGGGATGCCCTACCAGATCCAATGCCTGGGCGTTGCCCTCTACACCCTTGGTAGTGGCAAAAATGTCATGCGCCACAAC
TGCACCAGCCAGCCCAGCTGCCGCTTGCTAACGCCAAGTCTGACCGCATCTACCACCACTGTCCTGAGCCGTGGAGATGG
GATTGAGGCCCTCTTTGGATGGGTCCCTGGATCCAAACACCACCAGAAAGAGCCCATCACCACCGTCTTTGCACTCACTT
GGAACTTCGGCAGCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3922.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis