Browse Element(s) Details


OsAffx.14007.1.S1_at

Description tigr:9632.m02625
TID=OsAffx.14007.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2784010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g27790Os.51227.1.S1_s_at11/114+16232567..16237486Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os04g27790Os.50417.1.S1_at11/114+16232567..16237486Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os04g27790Os.51227.1.S1_x_at10/114+16232567..16237486Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os04g27790OsAffx.30980.1.S1_x_at1/114+16232567..16237486Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os04g27800Os.11829.1.S1_at3/114+16239598..16241515expressed protein
LOC_Os04g27810NANA4+16244655..16245116hypothetical protein
LOC_Os04g27820OsAffx.3922.1.S1_at11/114+16249016..16250792hypothetical protein
LOC_Os04g27820Os.57335.1.S1_at1/114+16249016..16250792hypothetical protein
LOC_Os04g27830OsAffx.14006.1.S1_at10/114+16254706..162587351,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase, putative
LOC_Os04g27840OsAffx.14007.1.S1_at10/114+16260055..16261902hypothetical protein
LOC_Os04g27850Os.52050.1.S1_at11/114+16262106..16269126oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os04g27860NANA4+16270647..1627185440S ribosomal protein S27, putative, expressed
LOC_Os04g27870NANA4+16278260..16279033retrotransposon protein, putative, unclassified
LOC_Os04g27880NANA4+16280580..16281131retrotransposon protein, putative, unclassified
LOC_Os04g27890NANA4+16282115..16288051retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14007.1.S1_at--173--231Chr04:16261821..16261845 (25 bp)
ATATTCTGCCGGAACAACAGCGACT
LOC_Os04g27840
OsAffx.14007.1.S1_at--190--2211Chr04:16261808..16261832 (25 bp)
ACAACAGCGACTACGCGCCAGAGAA
LOC_Os04g27840
OsAffx.14007.1.S1_at--714--2591Chr04:16261762..16261786 (25 bp)
AACGAGGACGCTGCGGTGCACCTAC
LOC_Os04g27840
OsAffx.14007.1.S1_at--788--6391Chr04:16261719..16261743 (25 bp)
GATCGGGACTCGTTGTGCGTGCTAC
LOC_Os04g27840
OsAffx.14007.1.S1_at--661--6631Chr04:16261708..16261732 (25 bp)
GTTGTGCGTGCTACATCAGCTGGAT
LOC_Os04g27840
OsAffx.14007.1.S1_at--708--8931Chr04:16261684..16261708 (25 bp)
TGACTGTGACGATGTTGGTGCGCTT
LOC_Os04g27840
OsAffx.14007.1.S1_at--832--7591NONE
GGGCATACCTGGGAAACTCATTGAA
NONE
OsAffx.14007.1.S1_at--88--3071Chr04:16260227..16260251 (25 bp)
AATCTCATATGGCTTCTACTTTCGA
LOC_Os04g27840
OsAffx.14007.1.S1_at--221--5872Chr08:21852715..21852739 (25 bp)
GAGCCTCATCAAAACCTCGAAATTT
NONE
OsAffx.14007.1.S1_at--629--7351Chr04:16260159..16260183 (25 bp)
GTGAATCCTGGTGGTCGTGCCAAGC
LOC_Os04g27840
OsAffx.14007.1.S1_at--395--1031Chr04:16260095..16260119 (25 bp)
AGGTGGTGGCATACGCGATCATGAT
LOC_Os04g27840
Target Sequence 
ATATTCTGCCGGAACAACAGCGACTACGCGCCAGAGAACCCCGACGGCCCGCCCCCGCCAACGAGGACGCTGCGGTGCAC
CTACCGTCGTGGTGGCGGTGAGGATCGGGACTCGTTGTGCGTGCTACATCAGCTGGATGACTGTGACGATGTTGGTGCGC
TTGGTGATGAGGGGTGGGTGTGGCCGCGGAAAGCGATGGGTTCGGTCGTTGAGGTCGTCGTGCCGAGCATGCGGGAGCAC
GGAGTAGGGGCATACCTGGGAAACTCATTGAAATCTCATATGGCTTCTACTTTCGAGCCTCATCAAAACCTCGAAATTTT
GGAGGGGCATCTCGGAATTGTGAATCCTGGTGGTCGTGCCAAGCCGGCGGGCGTACGGAGTAGGAGCGTATCTAGGGTAT
GTGAGGTGGTGGCATACGCGATCATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14007.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis