Browse Element(s) Details


Os.52050.1.S1_at

Description gb:AK064621.1
DB_XREF= gi:32974639
TID=Os.52050.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52050 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-113-D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-113-D10, full insert sequence.
FL= gb:AK064621.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2785011/11oxidoreductase, 2OG-Fe oxygenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g27790Os.51227.1.S1_s_at11/114+16232567..16237486Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os04g27790Os.50417.1.S1_at11/114+16232567..16237486Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os04g27790Os.51227.1.S1_x_at10/114+16232567..16237486Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os04g27790OsAffx.30980.1.S1_x_at1/114+16232567..16237486Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os04g27800Os.11829.1.S1_at3/114+16239598..16241515expressed protein
LOC_Os04g27810NANA4+16244655..16245116hypothetical protein
LOC_Os04g27820OsAffx.3922.1.S1_at11/114+16249016..16250792hypothetical protein
LOC_Os04g27820Os.57335.1.S1_at1/114+16249016..16250792hypothetical protein
LOC_Os04g27830OsAffx.14006.1.S1_at10/114+16254706..162587351,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase, putative
LOC_Os04g27840OsAffx.14007.1.S1_at10/114+16260055..16261902hypothetical protein
LOC_Os04g27850Os.52050.1.S1_at11/114+16262106..16269126oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os04g27860NANA4+16270647..1627185440S ribosomal protein S27, putative, expressed
LOC_Os04g27870NANA4+16278260..16279033retrotransposon protein, putative, unclassified
LOC_Os04g27880NANA4+16280580..16281131retrotransposon protein, putative, unclassified
LOC_Os04g27890NANA4+16282115..16288051retrotransposon protein, putative, unclassified
LOC_Os04g27900NANA4+16290989..16291471hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0018401biological_processpeptidyl-proline hydroxylation to 4-hydroxy-L-proline
GO:0004656molecular_functionprocollagen-proline 4-dioxygenase activity
GO:0016706molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52050.1.S1_at--957--7551Chr04:16267587..16267611 (25 bp)
GGGCCAGCGAGTTGCAACAATGTTG
LOC_Os04g27850
Os.52050.1.S1_at--488--8971Chr04:16267641..16267660 (20 bp)
TGAAACCCATTTTCCTCAGGCAGGA
LOC_Os04g27850
Os.52050.1.S1_at--604--7091Chr04:16268504..16268528 (25 bp)
GTCAAAGGATTATGTGTCAAGCCAA
LOC_Os04g27850
Os.52050.1.S1_at--942--4871Chr04:16268545..16268707 (25 bp)
GCTATTTTGGAGCATGGGACTCGAT
LOC_Os04g27850
Os.52050.1.S1_at--312--2411Chr04:16268712..16268736 (25 bp)
AAACAGACTCAAACAGCATTCATGG
LOC_Os04g27850
Os.52050.1.S1_at--733--6351Chr04:16268828..16268852 (25 bp)
GATGCCTTCTAATTTCTGGCTATGC
LOC_Os04g27850
Os.52050.1.S1_at--69--6771Chr04:16268921..16268945 (25 bp)
GTTCAATAACCCCACGTTCATATTT
LOC_Os04g27850
Os.52050.1.S1_at--208--4031Chr04:16268953..16268977 (25 bp)
CGTAGGCAATTTTAGCACCGCACAC
LOC_Os04g27850
Os.52050.1.S1_at--824--10011Chr04:16268965..16268989 (25 bp)
TAGCACCGCACACCACTGTTATTAT
LOC_Os04g27850
Os.52050.1.S1_at--496--1971Chr04:16268979..16269003 (25 bp)
ACTGTTATTATCCTTCCGGCTTCAG
LOC_Os04g27850
Os.52050.1.S1_at--914--10631Chr04:16268992..16269016 (25 bp)
TTCCGGCTTCAGCAAGGTGGTAACT
LOC_Os04g27850
Target Sequence 
GGGCCAGCGAGTTGCAACAATGTTGATGTATTTGACTGATGGTGTTGAAGGGGGTGAAACCCATTTTCCTCAGGCAGGAG
ATGGTGAATGTAGCTGTGGCGGGAAGATGGTCAAAGGATTATGTGTCAAGCCAAACAAAGGAGATGCTGTGCTATTTTGG
AGCATGGGACTCGATGGTGAAACAGACTCAAACAGCATTCATGGTGGGTGCCCTGTTCTGGAAGGGGAGAAATGGTCAGC
TACGAAATGGATGAGGCAAAAAGAATTTGTTTGAGCGAAAGATGAGGCGAAGAATGATGCCTTCTAATTTCTGGCTATGC
AGATATGGAGCTATATTCTTTCTATTATATGTAATGAAACGTTTCAGGAATCTTGCAAGCATATGAAAGTTCAATAACCC
CACGTTCATATTTCGTTTTACGTAGGCAATTTTAGCACCGCACACCACTGTTATTATCCTTCCGGCTTCAGCAAGGTGGT
AACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52050.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis