Browse Element(s) Details


Os.57335.1.S1_at

Description gb:AK111323.1
DB_XREF= gi:32996532
TID=Os.57335.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57335 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-181-D07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-181-D07, full insert sequence.
FL= gb:AK111323.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g115903/11retrotransposon protein, putative, unclassified
LOC_Os08g120403/11retrotransposon protein, putative, unclassified
LOC_Os09g043701/11hypothetical protein
LOC_Os04g278201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g11550NANA8+6761389..6761724hypothetical protein
LOC_Os08g11560NANA8+6764696..6765953retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11570OsAffx.31813.1.S1_x_at2/118+6766240..6772101retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11580OsAffx.29157.1.S1_at11/118+6773339..6773899hypothetical protein
LOC_Os08g11580OsAffx.29157.1.S1_x_at11/118+6773339..6773899hypothetical protein
LOC_Os08g11590Os.57335.1.S1_at3/118+6786072..6791726retrotransposon protein, putative, unclassified
LOC_Os08g11590OsAffx.20604.2.S1_at1/118+6786072..6791726retrotransposon protein, putative, unclassified
LOC_Os08g11599OsAffx.29159.1.S1_at11/118+6798592..6799181hypothetical protein
LOC_Os08g11610NANA8+6807700..6809066transposon protein, putative, unclassified
LOC_Os08g11620NANA8+6810231..6814029retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11630OsAffx.20730.1.S1_x_at1/118+6814702..6815175retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11630OsAffx.10020.1.S1_x_at1/118+6814702..6815175retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11630OsAffx.20733.1.S1_x_at1/118+6814702..6815175retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57335.1.S1_at--408--6211Chr10:2297242..2297266 (25 bp)
GAGGCGACGACTTGCGGCTTGCGGC
NONE
Os.57335.1.S1_at--1006--4691Chr10:2297255..2297279 (25 bp)
GCGGCTTGCGGCGACGAGCGTAACC
NONE
Os.57335.1.S1_at--399--4154Chr10:2297404..2297428 (25 bp)
CGCGGGATCCGACGTCGTGAGGCGA
NONE
Os.57335.1.S1_at--930--4592Chr10:2297558..2297582 (25 bp)
GCGACGAGCTTTTTTCAATGTTTTA
NONE
Os.57335.1.S1_at--1041--5752Chr10:2297560..2297584 (25 bp)
GACGAGCTTTTTTCAATGTTTTAAT
NONE
Os.57335.1.S1_at--434--6391Chr10:2297612..2297636 (25 bp)
GATATCCGGCAAAAACGGTCGGATA
NONE
Os.57335.1.S1_at--708--4112Chr10:2297641..2297665 (25 bp)
CCGACCGAATCCGAGTTCTGACGGA
NONE
Os.57335.1.S1_at--62--231Chr10:2297733..2297757 (25 bp)
ATATCTGAAAAAATCCGACCGCAAC
NONE
Os.57335.1.S1_at--54--2415Chr10:2297742..2297766 (25 bp)
AAAATCCGACCGCAACAATCCGCAT
NONE
Os.57335.1.S1_at--298--5154Chr10:2297753..2297777 (25 bp)
GCAACAATCCGCATCCGAAAAACAG
NONE
Os.57335.1.S1_at--559--3033Chr10:2297758..2297782 (25 bp)
AATCCGCATCCGAAAAACAGGATCG
NONE
Target Sequence 
GAGGCGACGACTTGCGGCTTGCGGCGACGAGCGTAACCGGCCGCGCCGCCGTCGGGGCGGCCGGGTCACGGCGACGGCCA
GCGCGAGGCGACGTCGTGTGGGTGCGGCGGACGGCAACGCCGGCCTCGGGGCGGCCGGATCCGGGGTTGGCGGCCCTGGA
GCCGCGGGATCCGACGTCGTGAGGCGACGACGACGGAGGGGGCTCGGCGGCGCGAGGGGACGGCGTGCGGCGGACGGCGA
CGAGCGGATCCGGCGTGCGACGTGCGACGGCAACGGCGGGAACTCGGCGGCGCGAAGCGACGGCGTGCGGCGGACGGCGA
CGAGCTTTTTTCAATGTTTTAATTTGGATTTTTCTGTTTATTATGATTCGGATATCCGGCAAAAACGGTCGGATAGTTTC
CGACCGAATCCGAGTTCTGACGGATACCATCGCTACTGTATTTGAATTCGTATCCGAGAAAAACTATCTGAATTCGTATC
CGAATCCGAAAATATCTGAAAAAATCCGACCGCAACAATCCGCATCCGAAAAACAGGATCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57335.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis