Browse Element(s) Details


OsAffx.29159.1.S1_at

Description tigr:9636.m01140
TID=OsAffx.29159.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1159911/11hypothetical protein
LOC_Os08g1205911/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g11580OsAffx.29157.1.S1_at11/118+6773339..6773899hypothetical protein
LOC_Os08g11580OsAffx.29157.1.S1_x_at11/118+6773339..6773899hypothetical protein
LOC_Os08g11590Os.57335.1.S1_at3/118+6786072..6791726retrotransposon protein, putative, unclassified
LOC_Os08g11590OsAffx.20604.2.S1_at1/118+6786072..6791726retrotransposon protein, putative, unclassified
LOC_Os08g11599OsAffx.29159.1.S1_at11/118+6798592..6799181hypothetical protein
LOC_Os08g11610NANA8+6807700..6809066transposon protein, putative, unclassified
LOC_Os08g11620NANA8+6810231..6814029retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11630OsAffx.20730.1.S1_x_at1/118+6814702..6815175retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11630OsAffx.10020.1.S1_x_at1/118+6814702..6815175retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11630OsAffx.20733.1.S1_x_at1/118+6814702..6815175retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29159.1.S1_at--742--8332Chr08:7095775..7095799 (25 bp)
GGCTGCGGCCGCGAGGCATAGAGCA
LOC_Os08g12059
OsAffx.29159.1.S1_at--298--5072Chr08:7095812..7095836 (25 bp)
GCAGCCGATCCGACAGGAGTCTGGA
LOC_Os08g12059
OsAffx.29159.1.S1_at--690--4092Chr08:7095822..7095846 (25 bp)
CGACAGGAGTCTGGACAACGGCTTG
LOC_Os08g12059
OsAffx.29159.1.S1_at--203--3912Chr08:7095832..7095953 (25 bp)
CTGGACAACGGCTTGGGCGAAGCCA
LOC_Os08g12059
OsAffx.29159.1.S1_at--913--4592Chr08:7095945..7095969 (25 bp)
GCGAAGCCAGCCATGGAGCGACCTG
LOC_Os08g12059
OsAffx.29159.1.S1_at--787--832Chr08:7095957..7095981 (25 bp)
ATGGAGCGACCTGGCTGGATTTCTC
LOC_Os08g12059
OsAffx.29159.1.S1_at--527--5832Chr08:7095964..7095988 (25 bp)
GACCTGGCTGGATTTCTCGGCAGAG
LOC_Os08g12059
OsAffx.29159.1.S1_at--221--4272Chr08:7095966..7095990 (25 bp)
CCTGGCTGGATTTCTCGGCAGAGCT
LOC_Os08g12059
OsAffx.29159.1.S1_at--784--7592Chr08:7096002..7096252 (25 bp)
GGGCAGCGGTTAAGACTTTATCTCA
LOC_Os08g12059
OsAffx.29159.1.S1_at--1026--7872Chr08:7096235..7096259 (25 bp)
GGTTAAGACTTTATCTCACCGATAC
LOC_Os08g12059
OsAffx.29159.1.S1_at--964--5692Chr08:7096241..7096265 (25 bp)
GACTTTATCTCACCGATACGAAATT
LOC_Os08g12059
Target Sequence 
GGCTGCGGCCGCGAGGCATAGAGCAGGCTGCTCCGCGGCAGCCGATCCGACAGGAGTCTGGACAACGGCTTGGGCGAAGC
CAGCCATGGAGCGACCTGGCTGGATTTCTCGGCAGAGCTGGAGACCTGGGGGGCAGCGGTTAAGACTTTATCTCACCGAT
ACGAAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29159.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis