Browse Element(s) Details


OsAffx.29157.1.S1_at

Description tigr:9636.m01137
TID=OsAffx.29157.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1158011/11hypothetical protein
LOC_Os08g1203011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g11520OsAffx.29155.1.S1_at11/118+6747298..6748956hypothetical protein
LOC_Os08g11530Os.45173.1.S1_x_at1/118+6752314..6753508retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11540Os.46715.1.S1_x_at1/118+6755789..6758661retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11540Os.56292.1.S1_x_at1/118+6755789..6758661retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11540Os.56292.1.S1_at1/118+6755789..6758661retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11540Os.46715.1.S1_at1/118+6755789..6758661retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11550NANA8+6761389..6761724hypothetical protein
LOC_Os08g11560NANA8+6764696..6765953retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11570OsAffx.31813.1.S1_x_at2/118+6766240..6772101retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11580OsAffx.29157.1.S1_at11/118+6773339..6773899hypothetical protein
LOC_Os08g11580OsAffx.29157.1.S1_x_at11/118+6773339..6773899hypothetical protein
LOC_Os08g11590Os.57335.1.S1_at3/118+6786072..6791726retrotransposon protein, putative, unclassified
LOC_Os08g11590OsAffx.20604.2.S1_at1/118+6786072..6791726retrotransposon protein, putative, unclassified
LOC_Os08g11599OsAffx.29159.1.S1_at11/118+6798592..6799181hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29157.1.S1_at--654--4692Chr08:7067508..7067532 (25 bp)
GCGGCAGTGGCGACAATGCGATGGT
LOC_Os08g12030
OsAffx.29157.1.S1_at--332--3472Chr08:7067456..7067480 (25 bp)
CAGTGGTGCGACAAGGCAGCGCACA
LOC_Os08g12030
OsAffx.29157.1.S1_at--544--9152Chr08:7067450..7067474 (25 bp)
TGCGACAAGGCAGCGCACAGCACAG
LOC_Os08g12030
OsAffx.29157.1.S1_at--923--2932Chr08:7067444..7067468 (25 bp)
AAGGCAGCGCACAGCACAGCGGCTA
LOC_Os08g12030
OsAffx.29157.1.S1_at--350--1652Chr08:7067439..7067463 (25 bp)
AGCGCACAGCACAGCGGCTAAGCGG
LOC_Os08g12030
OsAffx.29157.1.S1_at--1047--1492Chr08:7067432..7067456 (25 bp)
AGCACAGCGGCTAAGCGGCGTGGTG
LOC_Os08g12030
OsAffx.29157.1.S1_at--383--8232Chr08:7067398..7067422 (25 bp)
GGCAAGGCGAAACGGCCAGCACAGC
LOC_Os08g12030
OsAffx.29157.1.S1_at--446--3452Chr08:7067332..7067356 (25 bp)
CAGTAGCGGCGCAGCGAGCAGCGGT
LOC_Os08g12030
OsAffx.29157.1.S1_at--729--5052Chr08:7067296..7067320 (25 bp)
GCAGCAAGCACAGCACATGGCAGCG
LOC_Os08g12030
OsAffx.29157.1.S1_at--469--1492Chr08:7067294..7067318 (25 bp)
AGCAAGCACAGCACATGGCAGCGGC
LOC_Os08g12030
OsAffx.29157.1.S1_at--784--3232Chr08:7067292..7067316 (25 bp)
CAAGCACAGCACATGGCAGCGGCAG
LOC_Os08g12030
Target Sequence 
GCGGCAGTGGCGACAATGCGATGGTGGTGCNCGACATGGCGGCAGCGTGCAGCAGTGGTGCGACAAGGCAGCGCACAGCA
CAGCGGCTAAGCGGCGTGGTGGCGTGGCGNGGCAAGGCGAAACGGCCAGCACAGCAAGGCGGCAGCCGGCGCGGCAATGC
AGCGGCACAGCAGTGGCAGTAGCGGCGCAGCGAGCAGCGGTGCAGTGGCGGAGCAGCAAGCACAGCACATGGCAGCGGCA
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29157.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis