Browse Element(s) Details


Os.12653.1.S1_at

Description gb:AK100925.1
DB_XREF= gi:32986134
TID=Os.12653.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.12653 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023134G14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023134G14, full insert sequence.
FL= gb:AK060878.1 gb:AK100925.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5137011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51320OsAffx.14364.1.S1_s_at11/114+30174422..30176697transcription factor GT-3b, putative, expressed
LOC_Os04g51330Os.24793.1.A1_at11/114+30177873..30182855Maltose excess protein 1-like, chloroplast precursor, putative, expressed
LOC_Os04g51330Os.46481.2.S1_x_at1/114+30177873..30182855Maltose excess protein 1-like, chloroplast precursor, putative, expressed
LOC_Os04g51330Os.10838.3.S1_at1/114+30177873..30182855Maltose excess protein 1-like, chloroplast precursor, putative, expressed
LOC_Os04g51330OsAffx.28164.2.S1_at1/114+30177873..30182855Maltose excess protein 1-like, chloroplast precursor, putative, expressed
LOC_Os04g51340Os.8064.1.S1_at11/114+30186395..30190272Pectinacetylesterase protein, putative, expressed
LOC_Os04g51350Os.50298.1.S1_at10/114+30191026..30194081pentatricopeptide, putative, expressed
LOC_Os04g51360OsAffx.4146.1.S1_at11/114+30194705..30196609oxidoreductase, 2OG-Fe oxygenase family protein, putative
LOC_Os04g51370Os.12653.1.S1_at11/114+30197384..30205069Protein kinase domain containing protein, expressed
LOC_Os04g51380Os.52268.1.S1_at11/114+30209137..30212604Isoprenylcysteine carboxyl methyltransferase family protein, expressed
LOC_Os04g51380Os.7851.1.S1_x_at10/114+30209137..30212604Isoprenylcysteine carboxyl methyltransferase family protein, expressed
LOC_Os04g51380Os.52268.1.S1_x_at10/114+30209137..30212604Isoprenylcysteine carboxyl methyltransferase family protein, expressed
LOC_Os04g51390OsAffx.14365.1.S1_at11/114+30214129..30219237Possible apospory-associated protein C, putative, expressed
LOC_Os04g51390Os.34698.1.S1_x_at10/114+30214129..30219237Possible apospory-associated protein C, putative, expressed
LOC_Os04g51400Os.5873.1.S1_at11/114+30220395..30223780Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g51404Os.54761.1.S1_at11/114+30223061..30225142expressed protein
LOC_Os04g51410Os.37811.1.S1_at11/114+30226799..30232294NA
LOC_Os04g51410OsAffx.14366.1.S1_at10/114+30226799..30232294NA

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Gene Ontology Classification
GO idTypeName
GO:0005737cellular_componentcytoplasm
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12653.1.S1_at--132--5251Chr04:30198443..30198466 (24 bp)
GAACCCTTTACCAGCAGGCGAAAGT
LOC_Os04g51370
Os.12653.1.S1_at--52--4751Chr04:30197896..30197920 (25 bp)
GCTGTTCCTGTTAACTATGGTGGCT
LOC_Os04g51370
Os.12653.1.S1_at--315--7611Chr04:30197827..30197851 (25 bp)
GGGCAACCATATATTCAGCATCGAT
LOC_Os04g51370
Os.12653.1.S1_at--145--331Chr04:30197804..30197828 (25 bp)
ATACAACCAGGCAACTTCAACTCAT
LOC_Os04g51370
Os.12653.1.S1_at--335--8651Chr04:30197626..30197650 (25 bp)
TGGGCATCCATTTACCACAACTGGG
LOC_Os04g51370
Os.12653.1.S1_at--931--4851Chr04:30197602..30197626 (25 bp)
GCTACCTTCATCTCTTCCAAGAAAG
LOC_Os04g51370
Os.12653.1.S1_at--1052--991Chr04:30197579..30197603 (25 bp)
AGGATTACGGGAGCATCTTCTAGCG
LOC_Os04g51370
Os.12653.1.S1_at--74--5032Chr11:16823153..16823172 (20 bp)
GCAGTGCGATTCATTGCTGGCGACA
NONE
Os.12653.1.S1_at--996--2371Chr04:30197499..30197523 (25 bp)
AAACTGGGAGTTGCGTTGCGTTGCC
LOC_Os04g51370
Os.12653.1.S1_at--129--1671Chr04:30197472..30197496 (25 bp)
AGCCCGTCTGAGTATTCTTTTGCAG
LOC_Os04g51370
Os.12653.1.S1_at--983--8591Chr04:30197416..30197440 (25 bp)
TGGTCCTTTGTCGTACTCACAATTA
LOC_Os04g51370
Target Sequence 
GAACCCTTTACCAGCAGGCGAAAGTTACAGAGCAGACCATTTTTTTCACGCATCTTCTCGTGGGTCGCTTGGAGGGAATA
CTCATTCTGCTGTTCCTGTTAACTATGGTGGCTATAACCCNTGTAAATCATCCCCAACAAAATCCCCAAATTNCGGCATG
GGCAACCATATATTCAGCATCGATACAACCAGGCAACTTCAACTCATAATCATCCTAGAGGGAGTCACCACAACAGGCAA
CCTGCATGGCCCATGGCCGATGGAACGCCCTGGGGAGGAACGAGTGGGCATCCATTTACCACAACTGGGCTACCTTCATC
TCTTCCAAGAAAGGATTACGGGAGCATCTTCTAGCGCGGAATTGTGGAGCAGTGCGATTCATTGCTGGCGACATGAATTA
TTTGTAGTTTCAAACTGGGAGTTGCGTTGCGTTGCCTCAGCCCGTCTGAGTATTCTTTTGCAGTGTTGCTGCACTTGCAT
TCTTCCATTGGGGGTGGTCCTTTGTCGTACTCACAATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12653.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis