Browse Element(s) Details


OsAffx.14364.1.S1_s_at

Description tigr:9632.m04956
TID=OsAffx.14364.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=GT-1-like transcription factor, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5132011/11transcription factor GT-3b, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51250OsAffx.14363.1.S1_at11/114+30146904..30149773expressed protein
LOC_Os04g51260OsAffx.4145.2.S1_x_at11/114+30152720..30155227hypothetical protein
LOC_Os04g51260OsAffx.4145.1.S1_x_at1/114+30152720..30155227hypothetical protein
LOC_Os04g51270Os.4737.1.S1_at10/114+30155605..30157993Vacuolar ATP synthase subunit G 2, putative, expressed
LOC_Os04g51280Os.10087.1.S1_at11/114+30158201..30160450DAG protein, chloroplast precursor, putative, expressed
LOC_Os04g51280OsAffx.4145.1.S1_x_at5/114+30158201..30160450DAG protein, chloroplast precursor, putative, expressed
LOC_Os04g51290OsAffx.4145.1.S1_x_at11/114+30161460..30165649expressed protein
LOC_Os04g51290OsAffx.4145.1.S1_at10/114+30161460..30165649expressed protein
LOC_Os04g51290OsAffx.4145.2.S1_x_at3/114+30161460..30165649expressed protein
LOC_Os04g51300Os.17232.1.S2_at11/114+30166444..30169255L-ascorbate peroxidase, chloroplast precursor, putative, expressed
LOC_Os04g51300Os.17232.1.S1_at11/114+30166444..30169255L-ascorbate peroxidase, chloroplast precursor, putative, expressed
LOC_Os04g51310Os.27519.1.S1_at11/114+30169340..30171639putrescine-binding periplasmic protein, putative, expressed
LOC_Os04g51320OsAffx.14364.1.S1_s_at11/114+30174422..30176697transcription factor GT-3b, putative, expressed
LOC_Os04g51330Os.24793.1.A1_at11/114+30177873..30182855Maltose excess protein 1-like, chloroplast precursor, putative, expressed
LOC_Os04g51330Os.46481.2.S1_x_at1/114+30177873..30182855Maltose excess protein 1-like, chloroplast precursor, putative, expressed
LOC_Os04g51330Os.10838.3.S1_at1/114+30177873..30182855Maltose excess protein 1-like, chloroplast precursor, putative, expressed
LOC_Os04g51330OsAffx.28164.2.S1_at1/114+30177873..30182855Maltose excess protein 1-like, chloroplast precursor, putative, expressed
LOC_Os04g51340Os.8064.1.S1_at11/114+30186395..30190272Pectinacetylesterase protein, putative, expressed
LOC_Os04g51350Os.50298.1.S1_at10/114+30191026..30194081pentatricopeptide, putative, expressed
LOC_Os04g51360OsAffx.4146.1.S1_at11/114+30194705..30196609oxidoreductase, 2OG-Fe oxygenase family protein, putative
LOC_Os04g51370Os.12653.1.S1_at11/114+30197384..30205069Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14364.1.S1_s_at--607--811Chr04:30174948..30174972 (25 bp)
ATGGTAGACAGTGTCCTTTCTTTGA
LOC_Os04g51320
OsAffx.14364.1.S1_s_at--237--6311Chr04:30174925..30174949 (25 bp)
GATGAGTTGCATGCAGTCTTCACTG
LOC_Os04g51320
OsAffx.14364.1.S1_s_at--448--7151Chr04:30174910..30174934 (25 bp)
GTCTTCACTGAACGAGCTAGAACTA
LOC_Os04g51320
OsAffx.14364.1.S1_s_at--802--1431Chr04:30174892..30174916 (25 bp)
AGAACTATGCAACAACAACTCCTTG
LOC_Os04g51320
OsAffx.14364.1.S1_s_at--199--3271Chr04:30174877..30174901 (25 bp)
CAACTCCTTGAGTCTGAATCTGGAC
LOC_Os04g51320
OsAffx.14364.1.S1_s_at--890--5252Chr04:30174862..30174886 (25 bp)
GAATCTGGACCATCTGTTAAAAAGA
LOC_Os04g51320
OsAffx.14364.1.S1_s_at--340--7371Chr04:30174819..30174843 (25 bp)
GTGACCTGTCATCGGAGGACTCTGA
LOC_Os04g51320
OsAffx.14364.1.S1_s_at--610--7211Chr04:30174689..30174713 (25 bp)
GTCGAGGACTAGCATTTCAAGCATC
LOC_Os04g51320
OsAffx.14364.1.S1_s_at--684--1511Chr04:30174633..30174657 (25 bp)
AGCAGCGCATGGATATTCAGTGGCA
LOC_Os04g51320
OsAffx.14364.1.S1_s_at--14--891Chr04:30174595..30174619 (25 bp)
AGGCGTTCCCAGGAGCGGATTGTTT
LOC_Os04g51320
OsAffx.14364.1.S1_s_at--544--5971Chr04:30174457..30174481 (25 bp)
GAGAAAAGGGATGCCCTCCTGACCA
LOC_Os04g51320
Target Sequence 
ATGGTAGACAGTGTCCTTTCTTTGATGAGTTGCATGCAGTCTTCACTGAACGAGCTAGAACTATGCAACAACAACTCCTT
GAGTCTGAATCTGGACCATCTGTTAAAAAGAAACTAAAGCGACCAAGTGGTGACCTGTCATCGGAGGACTCTGATGATGA
GGAAGATGGCAGTGGAGATAGTGGCGATGAGAAACCCATAAGAAGCAGAAAGAGGAAAATTGCTGACAAGAGGCAACAAT
CGCAACGAATGGCAGAAAAGTCGAGGACTAGCATTTCAAGCATCCATGAATTGTTGCAGGATTTCCTGGTGCAGCAGCAG
CGCATGGATATTCAGTGGCATGAGATGATGGAGAGGCGTTCCCAGGAGCGGATTGTTTTTGAACAAGAATGGCGTCAGTC
AATGCAAAAGCTAGAGCAGGAGAGACTGATGCTGGAGCACACATGGATGGAGCGAGAGGAGCAACGAAGGATGAGAGAAG
AAGCACGAGCTGAGAAAAGGGATGCCCTCCTGACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14364.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis