Browse Element(s) Details


OsAffx.14363.1.S1_at

Description tigr:9632.m04948
TID=OsAffx.14363.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5125011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51210OsAffx.20293.2.S1_at1/114+30124437..30125828retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g51220NANA4+30130348..30131283retrotransposon protein, putative, unclassified
LOC_Os04g51230NANA4+30131899..30138054retrotransposon protein, putative, unclassified
LOC_Os04g51240Os.5617.1.S1_at11/114+30142907..30144569EF hand family protein, expressed
LOC_Os04g51250OsAffx.14363.1.S1_at11/114+30146904..30149773expressed protein
LOC_Os04g51260OsAffx.4145.2.S1_x_at11/114+30152720..30155227hypothetical protein
LOC_Os04g51260OsAffx.4145.1.S1_x_at1/114+30152720..30155227hypothetical protein
LOC_Os04g51270Os.4737.1.S1_at10/114+30155605..30157993Vacuolar ATP synthase subunit G 2, putative, expressed
LOC_Os04g51280Os.10087.1.S1_at11/114+30158201..30160450DAG protein, chloroplast precursor, putative, expressed
LOC_Os04g51280OsAffx.4145.1.S1_x_at5/114+30158201..30160450DAG protein, chloroplast precursor, putative, expressed
LOC_Os04g51290OsAffx.4145.1.S1_x_at11/114+30161460..30165649expressed protein
LOC_Os04g51290OsAffx.4145.1.S1_at10/114+30161460..30165649expressed protein
LOC_Os04g51290OsAffx.4145.2.S1_x_at3/114+30161460..30165649expressed protein
LOC_Os04g51300Os.17232.1.S2_at11/114+30166444..30169255L-ascorbate peroxidase, chloroplast precursor, putative, expressed
LOC_Os04g51300Os.17232.1.S1_at11/114+30166444..30169255L-ascorbate peroxidase, chloroplast precursor, putative, expressed
LOC_Os04g51310Os.27519.1.S1_at11/114+30169340..30171639putrescine-binding periplasmic protein, putative, expressed
LOC_Os04g51320OsAffx.14364.1.S1_s_at11/114+30174422..30176697transcription factor GT-3b, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14363.1.S1_at--861--711Chr04:30147846..30147870 (25 bp)
ATGTTGCCACCCTCATGGTTTACAA
LOC_Os04g51250
OsAffx.14363.1.S1_at--352--10491Chr04:30147721..30147745 (25 bp)
TTAACAAGCAGTTAGCTGGTCCACA
LOC_Os04g51250
OsAffx.14363.1.S1_at--446--1611Chr04:30147708..30147732 (25 bp)
AGCTGGTCCACATAAGGATCCTCCA
LOC_Os04g51250
OsAffx.14363.1.S1_at--1068--991Chr04:30147694..30147718 (25 bp)
AGGATCCTCCATGCATGAATGTTGT
LOC_Os04g51250
OsAffx.14363.1.S1_at--312--4991Chr04:30147682..30147706 (25 bp)
GCATGAATGTTGTCGCCAAGCAGAT
LOC_Os04g51250
OsAffx.14363.1.S1_at--261--2791Chr04:30147288..30147312 (25 bp)
AAGAGTTCCGGAGGCTGATCATGGA
LOC_Os04g51250
OsAffx.14363.1.S1_at--516--3751Chr04:30147091..30147115 (25 bp)
CTCATGTTCCTGCAGGACATCCGGG
LOC_Os04g51250
OsAffx.14363.1.S1_at--645--2191Chr04:30147040..30147064 (25 bp)
ACACACCAGCTTAATCCATCATTTG
LOC_Os04g51250
OsAffx.14363.1.S1_at--1009--4311Chr04:30147025..30147049 (25 bp)
CCATCATTTGGGTTGCAGACTTGCA
LOC_Os04g51250
OsAffx.14363.1.S1_at--238--5691Chr04:30147008..30147032 (25 bp)
GACTTGCATCAGTTAACGCTCTATA
LOC_Os04g51250
OsAffx.14363.1.S1_at--686--4131Chr04:30146992..30147016 (25 bp)
CGCTCTATAATACTCACGTTAACTG
LOC_Os04g51250
Target Sequence 
ATGTTGCCACCCTCATGGTTTACAACTCGATTAACAAGCAGTTAGCTGGTCCACATAAGGATCCTCCATGCATGAATGTT
GTCGCCAAGCAGATGGAGCAATACAAGAAGGAAACTCCCGAGGGGATAACACTGGAAGAGTTCCGGAGGCTGATCATGGA
GTGGGTCCGCAAGGACCTGCGGCTCGTCCTGGCGAACAAGGCGGCGGTGGCGATCATGGCGGCGCCGCTGCTCGCCGTCA
CGACCAAGAGCGCCGGCAGGCAGGTGCCGAGGGTCGGGCCCGCCGTGGAGAAGGTGCCCACGCCGCTGCTCTTCACCGTC
TTCTCCGTCGGCCTCATGTTCCTGCAGGACATCCGGGCGGGCAAGCAGTGACTGAGTAAAAACACACACCAGCTTAATCC
ATCATTTGGGTTGCAGACTTGCATCAGTTAACGCTCTATAATACTCACGTTAACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14363.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis