Browse Element(s) Details


Os.27519.1.S1_at

Description gb:AK120467.1
DB_XREF= gi:37990090
TID=Os.27519.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27519 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013109C06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013109C06, full insert sequence.
FL= gb:AK120467.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5131011/11putrescine-binding periplasmic protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51240Os.5617.1.S1_at11/114+30142907..30144569EF hand family protein, expressed
LOC_Os04g51250OsAffx.14363.1.S1_at11/114+30146904..30149773expressed protein
LOC_Os04g51260OsAffx.4145.2.S1_x_at11/114+30152720..30155227hypothetical protein
LOC_Os04g51260OsAffx.4145.1.S1_x_at1/114+30152720..30155227hypothetical protein
LOC_Os04g51270Os.4737.1.S1_at10/114+30155605..30157993Vacuolar ATP synthase subunit G 2, putative, expressed
LOC_Os04g51280Os.10087.1.S1_at11/114+30158201..30160450DAG protein, chloroplast precursor, putative, expressed
LOC_Os04g51280OsAffx.4145.1.S1_x_at5/114+30158201..30160450DAG protein, chloroplast precursor, putative, expressed
LOC_Os04g51290OsAffx.4145.1.S1_x_at11/114+30161460..30165649expressed protein
LOC_Os04g51290OsAffx.4145.1.S1_at10/114+30161460..30165649expressed protein
LOC_Os04g51290OsAffx.4145.2.S1_x_at3/114+30161460..30165649expressed protein
LOC_Os04g51300Os.17232.1.S2_at11/114+30166444..30169255L-ascorbate peroxidase, chloroplast precursor, putative, expressed
LOC_Os04g51300Os.17232.1.S1_at11/114+30166444..30169255L-ascorbate peroxidase, chloroplast precursor, putative, expressed
LOC_Os04g51310Os.27519.1.S1_at11/114+30169340..30171639putrescine-binding periplasmic protein, putative, expressed
LOC_Os04g51320OsAffx.14364.1.S1_s_at11/114+30174422..30176697transcription factor GT-3b, putative, expressed
LOC_Os04g51330Os.24793.1.A1_at11/114+30177873..30182855Maltose excess protein 1-like, chloroplast precursor, putative, expressed
LOC_Os04g51330Os.46481.2.S1_x_at1/114+30177873..30182855Maltose excess protein 1-like, chloroplast precursor, putative, expressed
LOC_Os04g51330Os.10838.3.S1_at1/114+30177873..30182855Maltose excess protein 1-like, chloroplast precursor, putative, expressed
LOC_Os04g51330OsAffx.28164.2.S1_at1/114+30177873..30182855Maltose excess protein 1-like, chloroplast precursor, putative, expressed
LOC_Os04g51340Os.8064.1.S1_at11/114+30186395..30190272Pectinacetylesterase protein, putative, expressed
LOC_Os04g51350Os.50298.1.S1_at10/114+30191026..30194081pentatricopeptide, putative, expressed
LOC_Os04g51360OsAffx.4146.1.S1_at11/114+30194705..30196609oxidoreductase, 2OG-Fe oxygenase family protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27519.1.S1_at--889--1111Chr04:30169932..30169956 (25 bp)
AGTGATGTTATTCCTGCTGCGAAGC
LOC_Os04g51310
Os.27519.1.S1_at--437--6671Chr04:30169884..30169908 (25 bp)
GTTCCCAAGTCAGGCAGTAGTCTAT
LOC_Os04g51310
Os.27519.1.S1_at--405--10111Chr04:30169750..30169886 (25 bp)
TATGGGCTGATCTATGGGCGATACC
LOC_Os04g51310
Os.27519.1.S1_at--278--8371Chr04:30169734..30169758 (25 bp)
GGCGATACCATCTGCAACCAAATTT
LOC_Os04g51310
Os.27519.1.S1_at--461--10331Chr04:30169712..30169736 (25 bp)
TTTCAGACTGATCGAATTGGCGGCA
LOC_Os04g51310
Os.27519.1.S1_at--945--1091Chr04:30169657..30169681 (25 bp)
AGTGGTTTGACTTCTGCCTGCAGAG
LOC_Os04g51310
Os.27519.1.S1_at--963--10011Chr04:30169629..30169653 (25 bp)
TAGAAGCTTACCCTTTCGGCAAGAT
LOC_Os04g51310
Os.27519.1.S1_at--147--10191Chr04:30169582..30169606 (25 bp)
TATTCCTCGAGAAACCGGTGCCTGA
LOC_Os04g51310
Os.27519.1.S1_at--932--1771Chr04:30169569..30169593 (25 bp)
ACCGGTGCCTGAAGTTCCTCAAGAA
LOC_Os04g51310
Os.27519.1.S1_at--264--791Chr04:30169473..30169497 (25 bp)
ATGTGAGTTTCTAGAGCCTCTATCA
LOC_Os04g51310
Os.27519.1.S1_at--626--891Chr04:30169444..30169468 (25 bp)
AGGCGCTGGACGATTACCAATGGCT
LOC_Os04g51310
Target Sequence 
AGTGATGTTATTCCTGCTGCGAAGCGAATGTCTGACGTTGCAGTGGTGGTTCCCAAGTCAGGCAGTAGTCTATGGGCTGA
TCTATGGGCGATACCATCTGCAACCAAATTTCAGACTGATCGAATTGGCGGCAGAACTAGAGGCCCATCTCCACTTATCA
ACCAGTGGTTTGACTTCTGCCTGCAGAGTGCTAGAAGCTTACCCTTTCGGCAAGATGTCATCCCAGGAGCATCGCCACTA
TTCCTCGAGAAACCGGTGCCTGAAGTTCCTCAAGAACGAAACAAGAGAAAGCCAAAGCTGGAGACGNATCTTGTCAGAGG
AGCNCCTNCCCTTGNAATCCTGGNAAAAATGTGAGTTTCTAGAGCCTCTATCAGAAAAGGCGCTGGACGATTACCAATGG
CT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27519.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis