Browse Element(s) Details


Os.4737.1.S1_at

Description gb:AK059032.1
DB_XREF= gi:32969050
TID=Os.4737.1
CNT=39
FEA=FLmRNA
TIER=FL+Stack
STK=13
UG=Os.4737 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013101A22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-021-C05, full insert sequence.
FL= gb:AK059032.1 gb:AK067286.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5127010/11Vacuolar ATP synthase subunit G 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51220NANA4+30130348..30131283retrotransposon protein, putative, unclassified
LOC_Os04g51230NANA4+30131899..30138054retrotransposon protein, putative, unclassified
LOC_Os04g51240Os.5617.1.S1_at11/114+30142907..30144569EF hand family protein, expressed
LOC_Os04g51250OsAffx.14363.1.S1_at11/114+30146904..30149773expressed protein
LOC_Os04g51260OsAffx.4145.2.S1_x_at11/114+30152720..30155227hypothetical protein
LOC_Os04g51260OsAffx.4145.1.S1_x_at1/114+30152720..30155227hypothetical protein
LOC_Os04g51270Os.4737.1.S1_at10/114+30155605..30157993Vacuolar ATP synthase subunit G 2, putative, expressed
LOC_Os04g51280Os.10087.1.S1_at11/114+30158201..30160450DAG protein, chloroplast precursor, putative, expressed
LOC_Os04g51280OsAffx.4145.1.S1_x_at5/114+30158201..30160450DAG protein, chloroplast precursor, putative, expressed
LOC_Os04g51290OsAffx.4145.1.S1_x_at11/114+30161460..30165649expressed protein
LOC_Os04g51290OsAffx.4145.1.S1_at10/114+30161460..30165649expressed protein
LOC_Os04g51290OsAffx.4145.2.S1_x_at3/114+30161460..30165649expressed protein
LOC_Os04g51300Os.17232.1.S2_at11/114+30166444..30169255L-ascorbate peroxidase, chloroplast precursor, putative, expressed
LOC_Os04g51300Os.17232.1.S1_at11/114+30166444..30169255L-ascorbate peroxidase, chloroplast precursor, putative, expressed
LOC_Os04g51310Os.27519.1.S1_at11/114+30169340..30171639putrescine-binding periplasmic protein, putative, expressed
LOC_Os04g51320OsAffx.14364.1.S1_s_at11/114+30174422..30176697transcription factor GT-3b, putative, expressed
LOC_Os04g51330Os.24793.1.A1_at11/114+30177873..30182855Maltose excess protein 1-like, chloroplast precursor, putative, expressed
LOC_Os04g51330Os.46481.2.S1_x_at1/114+30177873..30182855Maltose excess protein 1-like, chloroplast precursor, putative, expressed
LOC_Os04g51330Os.10838.3.S1_at1/114+30177873..30182855Maltose excess protein 1-like, chloroplast precursor, putative, expressed
LOC_Os04g51330OsAffx.28164.2.S1_at1/114+30177873..30182855Maltose excess protein 1-like, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015991biological_processATP hydrolysis coupled proton transport
GO:0000325cellular_componentvacuole (sensu Magnoliophyta)
GO:0016469cellular_componentproton-transporting two-sector ATPase complex
GO:0046933molecular_functionhydrogen-transporting ATP synthase activity, rotational mechanism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4737.1.S1_at--271--8111Chr04:30156709..30156733 (25 bp)
GGACGCAAACAGACGCCAAAGTGGA
LOC_Os04g51270
Os.4737.1.S1_at--747--2871Chr04:30156691..30156715 (25 bp)
AAGTGGAATCCAGCAATTGTTGGCT
LOC_Os04g51270
Os.4737.1.S1_at--383--2231Chr04:30156648..30156671 (24 bp)
AAATAGTAAATGCTGCTAGGGCTGC
LOC_Os04g51270
Os.4737.1.S1_at--1022--3831NONE
CTGCTAGGGCTGCAAAATCGGCAAG
NONE
Os.4737.1.S1_at--1020--1991Chr04:30155986..30156010 (25 bp)
ACTCTGGTGCAAATGTCAAGCGTCT
LOC_Os04g51270
Os.4737.1.S1_at--571--9711Chr04:30155971..30155995 (25 bp)
TCAAGCGTCTTGAGCAGGAGACAGC
LOC_Os04g51270
Os.4737.1.S1_at--1033--2011Chr04:30155857..30155881 (25 bp)
ACTAAGGGTTGATGGCTTGCTGCTA
LOC_Os04g51270
Os.4737.1.S1_at--960--8871Chr04:30155848..30155872 (25 bp)
TGATGGCTTGCTGCTAGGCGATTTG
LOC_Os04g51270
Os.4737.1.S1_at--794--8791Chr04:30155712..30155736 (25 bp)
TGTTCATCAGCAGCCATGTTTCGTA
LOC_Os04g51270
Os.4737.1.S1_at--760--1731Chr04:30155679..30155703 (25 bp)
ACCTCGGTTCCTGTCTGGTAAATAT
LOC_Os04g51270
Os.4737.1.S1_at--868--7831Chr04:30155663..30155687 (25 bp)
GGTAAATATTATCCTTTCATGTATC
LOC_Os04g51270
Target Sequence 
GGACGCAAACAGACGCCAAAGTGGAATCCAGCAATTGTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTA
GGGCTGCAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAGCTGAATACCGTGCCCAGATGGAG
GCTGAATTTCAGAGGAAGGTTGCAGAGAGTAGCGGTGACTCTGGTGCAAATGTCAAGCGTCTTGAGCAGGAGACAGCGGA
AAAAATCGCACAACTCAAGCAGCAGGCTGCAAGTATCTCCCCTGAAGTGATTCAGATGCTTCTGAGGCATGTCACCACTG
TGAAGAACTAAGGGTTGATGGCTTGCTGCTAGGCGATTTGCCATACATCTGATGGCAAACTTGTACTGTTTATTTTTTGA
GAGGGTGGTAAGAATAACTTCGTCTCTTCTAGCTGTAATTCCGTGTTCCGAATAACGGAATAAACTGCTTCTGTTCATCA
GCAGCCATGTTTCGTACTTTGAAAACCTCGGTTCCTGTCTGGTAAATATTATCCTTTCATGTATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4737.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis