Browse Element(s) Details


Os.5617.1.S1_at

Description gb:AK069777.1
DB_XREF= gi:32979801
TID=Os.5617.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5617 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023026G02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023026G02, full insert sequence.
FL= gb:AK069777.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5124011/11EF hand family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51200NANA4+30118520..30120857retrotransposon protein, putative, unclassified
LOC_Os04g51210OsAffx.20293.2.S1_at1/114+30124437..30125828retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g51220NANA4+30130348..30131283retrotransposon protein, putative, unclassified
LOC_Os04g51230NANA4+30131899..30138054retrotransposon protein, putative, unclassified
LOC_Os04g51240Os.5617.1.S1_at11/114+30142907..30144569EF hand family protein, expressed
LOC_Os04g51250OsAffx.14363.1.S1_at11/114+30146904..30149773expressed protein
LOC_Os04g51260OsAffx.4145.2.S1_x_at11/114+30152720..30155227hypothetical protein
LOC_Os04g51260OsAffx.4145.1.S1_x_at1/114+30152720..30155227hypothetical protein
LOC_Os04g51270Os.4737.1.S1_at10/114+30155605..30157993Vacuolar ATP synthase subunit G 2, putative, expressed
LOC_Os04g51280Os.10087.1.S1_at11/114+30158201..30160450DAG protein, chloroplast precursor, putative, expressed
LOC_Os04g51280OsAffx.4145.1.S1_x_at5/114+30158201..30160450DAG protein, chloroplast precursor, putative, expressed
LOC_Os04g51290OsAffx.4145.1.S1_x_at11/114+30161460..30165649expressed protein
LOC_Os04g51290OsAffx.4145.1.S1_at10/114+30161460..30165649expressed protein
LOC_Os04g51290OsAffx.4145.2.S1_x_at3/114+30161460..30165649expressed protein
LOC_Os04g51300Os.17232.1.S2_at11/114+30166444..30169255L-ascorbate peroxidase, chloroplast precursor, putative, expressed
LOC_Os04g51300Os.17232.1.S1_at11/114+30166444..30169255L-ascorbate peroxidase, chloroplast precursor, putative, expressed
LOC_Os04g51310Os.27519.1.S1_at11/114+30169340..30171639putrescine-binding periplasmic protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5617.1.S1_at--689--9251Chr04:30144093..30144209 (25 bp)
TCCTCTGCGTCTACAACGACATCAA
LOC_Os04g51240
Os.5617.1.S1_at--441--9711Chr04:30144072..30144096 (25 bp)
TCAACAAGTACTTACCAGGGCCGCA
LOC_Os04g51240
Os.5617.1.S1_at--905--3691Chr04:30144047..30144071 (25 bp)
CTATGATCCGCCCTCCAAGGAGAAG
LOC_Os04g51240
Os.5617.1.S1_at--1073--2071Chr04:30143365..30143389 (25 bp)
ACATCAACCTGGACGGGCTCCTGGA
LOC_Os04g51240
Os.5617.1.S1_at--792--7231Chr04:30143298..30143322 (25 bp)
GTCGCTGTGCGCGATCAGCTTCAAG
LOC_Os04g51240
Os.5617.1.S1_at--158--8591Chr04:30143191..30143215 (25 bp)
TGGTGCGCAAGGTGCCCAACTCCAT
LOC_Os04g51240
Os.5617.1.S1_at--1047--7111Chr04:30143138..30143162 (25 bp)
GTCATGGCCCAGAAATCCACCGAGG
LOC_Os04g51240
Os.5617.1.S1_at--216--8371Chr04:30143114..30143138 (25 bp)
GGCGTCGAGTAGACGGCCATCCGAT
LOC_Os04g51240
Os.5617.1.S1_at--107--5911Chr04:30143071..30143095 (25 bp)
GAGCTCGCGAGCTCGATCGAACCGA
LOC_Os04g51240
Os.5617.1.S1_at--82--2631Chr04:30143052..30143076 (25 bp)
AACCGACGACGTCGTATGATCGTAA
LOC_Os04g51240
Os.5617.1.S1_at--601--6391Chr04:30143035..30143059 (25 bp)
GATCGTAACGTGTAAATGCTGCACT
LOC_Os04g51240
Target Sequence 
TCCTCTGCGTCTACAACGACATCAACAAGTACTTACCAGGGCCGCACTATGATCCGCCCTCCAAGGAGAAGCTCAAGGCC
ATGATGAATGAGTACGACATCAACCTGGACGGGCTCCTGGACCGGGAGGAGTTCGCGGAGTTCATCCGGAAGCTGACGGC
GGAGTCGCTGTGCGCGATCAGCTTCAAGCTGCTGGTGACGCTGGTGGCGGCGCCGGCGCTGGCGCTGGCGACCAAGAGGG
CGACGGAGGGCGTGCCCGGCGTCGGCAGGGTGGTGCGCAAGGTGCCCAACTCCATCTACGCCTCCGTCATCACCCTCGGC
GTCGTCATGGCCCAGAAATCCACCGAGGGCGTCGAGTAGACGGCCATCCGATNCGAGCCTGCNAGATTCAGAGCTCGCGA
GCTCGATCGAACCGACGACGTCGTATGATCGTAACGTGTAAATGCTGCACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5617.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis