Browse Element(s) Details


OsAffx.4145.1.S1_at

Description tigr:9632.m04953
TID=OsAffx.4145.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to plastid protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5129010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51230NANA4+30131899..30138054retrotransposon protein, putative, unclassified
LOC_Os04g51240Os.5617.1.S1_at11/114+30142907..30144569EF hand family protein, expressed
LOC_Os04g51250OsAffx.14363.1.S1_at11/114+30146904..30149773expressed protein
LOC_Os04g51260OsAffx.4145.2.S1_x_at11/114+30152720..30155227hypothetical protein
LOC_Os04g51260OsAffx.4145.1.S1_x_at1/114+30152720..30155227hypothetical protein
LOC_Os04g51270Os.4737.1.S1_at10/114+30155605..30157993Vacuolar ATP synthase subunit G 2, putative, expressed
LOC_Os04g51280Os.10087.1.S1_at11/114+30158201..30160450DAG protein, chloroplast precursor, putative, expressed
LOC_Os04g51280OsAffx.4145.1.S1_x_at5/114+30158201..30160450DAG protein, chloroplast precursor, putative, expressed
LOC_Os04g51290OsAffx.4145.1.S1_x_at11/114+30161460..30165649expressed protein
LOC_Os04g51290OsAffx.4145.1.S1_at10/114+30161460..30165649expressed protein
LOC_Os04g51290OsAffx.4145.2.S1_x_at3/114+30161460..30165649expressed protein
LOC_Os04g51300Os.17232.1.S2_at11/114+30166444..30169255L-ascorbate peroxidase, chloroplast precursor, putative, expressed
LOC_Os04g51300Os.17232.1.S1_at11/114+30166444..30169255L-ascorbate peroxidase, chloroplast precursor, putative, expressed
LOC_Os04g51310Os.27519.1.S1_at11/114+30169340..30171639putrescine-binding periplasmic protein, putative, expressed
LOC_Os04g51320OsAffx.14364.1.S1_s_at11/114+30174422..30176697transcription factor GT-3b, putative, expressed
LOC_Os04g51330Os.24793.1.A1_at11/114+30177873..30182855Maltose excess protein 1-like, chloroplast precursor, putative, expressed
LOC_Os04g51330Os.46481.2.S1_x_at1/114+30177873..30182855Maltose excess protein 1-like, chloroplast precursor, putative, expressed
LOC_Os04g51330Os.10838.3.S1_at1/114+30177873..30182855Maltose excess protein 1-like, chloroplast precursor, putative, expressed
LOC_Os04g51330OsAffx.28164.2.S1_at1/114+30177873..30182855Maltose excess protein 1-like, chloroplast precursor, putative, expressed
LOC_Os04g51340Os.8064.1.S1_at11/114+30186395..30190272Pectinacetylesterase protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4145.1.S1_at--65--1951Chr04:30164236..30164260 (25 bp)
ACGGCGTCGGGCATGCGCTGTTCCA
LOC_Os04g51290
OsAffx.4145.1.S1_at--973--3331Chr04:30164434..30164458 (25 bp)
CACGGCGCCGTTCAGGACATGGAAA
LOC_Os04g51290
OsAffx.4145.1.S1_at--141--1951Chr04:30164435..30164459 (25 bp)
ACGGCGCCGTTCAGGACATGGAAAG
LOC_Os04g51290
OsAffx.4145.1.S1_at--418--2091Chr04:30164450..30164718 (25 bp)
ACATGGAAAGGCATTGCGACGAAGG
LOC_Os04g51290
OsAffx.4145.1.S1_at--918--5311Chr04:30164714..30164738 (25 bp)
GAAGGGGTACAGCTTAATCATCAAA
LOC_Os04g51290
OsAffx.4145.1.S1_at--1094--2331Chr04:30164736..30165117 (25 bp)
AAAGCTAACAATCCTAGGCTCCCAG
LOC_Os04g51290
OsAffx.4145.1.S1_at--652--1511Chr04:30164738..30165119 (25 bp)
AGCTAACAATCCTAGGCTCCCAGGT
LOC_Os04g51290
OsAffx.4145.1.S1_at--385--3731NONE
CTAACAATCCTAGGCTCCCAGGTGT
NONE
OsAffx.4145.1.S1_at--1025--2431Chr04:30164742..30165123 (25 bp)
AACAATCCTAGGCTCCCAGGTGTTC
LOC_Os04g51290
OsAffx.4145.1.S1_at--589--3191Chr04:30164744..30165125 (25 bp)
CAATCCTAGGCTCCCAGGTGTTCTA
LOC_Os04g51290
OsAffx.4145.1.S1_at--587--9251Chr04:30165109..30165128 (20 bp)
TCCTAGGCTCCCAGGTGTTCTATTT
LOC_Os04g51290
Target Sequence
ACGGCGTCGGGCATGCGCTGTTCCAAATGTGGGTCAAACGGCGGGCGACGACGGCGAAGCGGCGTGGCAGCGACGGCGGC
GTCGGGCGCGCGCTGTTCCACATGTGGGGGAAACGGCGGGCGACCGCAAGCGCTGGAATGTGGGGTACGGGAAGCCGGTG
GAAGGCCAAGAAGCTGCACTGGTGGCAGCGGGTGAGGCCACGGCGCCGTTCAGGACATGGAAAGGCATTGCGACGAAGGG
GTACAGCTTAATCATCAAAGCTAACAATCCTAGGCTCCCAGGTGTTCTATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4145.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis