Browse Element(s) Details


OsAffx.14366.1.S1_at

Description tigr:9632.m04968
TID=OsAffx.14366.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5141010/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51370Os.12653.1.S1_at11/114+30197384..30205069Protein kinase domain containing protein, expressed
LOC_Os04g51380Os.52268.1.S1_at11/114+30209137..30212604Isoprenylcysteine carboxyl methyltransferase family protein, expressed
LOC_Os04g51380Os.7851.1.S1_x_at10/114+30209137..30212604Isoprenylcysteine carboxyl methyltransferase family protein, expressed
LOC_Os04g51380Os.52268.1.S1_x_at10/114+30209137..30212604Isoprenylcysteine carboxyl methyltransferase family protein, expressed
LOC_Os04g51390OsAffx.14365.1.S1_at11/114+30214129..30219237Possible apospory-associated protein C, putative, expressed
LOC_Os04g51390Os.34698.1.S1_x_at10/114+30214129..30219237Possible apospory-associated protein C, putative, expressed
LOC_Os04g51400Os.5873.1.S1_at11/114+30220395..30223780Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g51404Os.54761.1.S1_at11/114+30223061..30225142expressed protein
LOC_Os04g51410Os.37811.1.S1_at11/114+30226799..30232294NA
LOC_Os04g51410OsAffx.14366.1.S1_at10/114+30226799..30232294NA
LOC_Os04g51420OsAffx.13041.1.S1_at10/114+30235388..30236585transposon protein, putative, unclassified
LOC_Os04g51420OsAffx.13041.1.S1_x_at8/114+30235388..30236585transposon protein, putative, unclassified
LOC_Os04g51420OsAffx.13041.4.S1_x_at5/114+30235388..30236585transposon protein, putative, unclassified
LOC_Os04g51420OsAffx.13041.4.S1_at4/114+30235388..30236585transposon protein, putative, unclassified
LOC_Os04g51420Os.28110.1.S1_x_at1/114+30235388..30236585transposon protein, putative, unclassified
LOC_Os04g51430Os.51756.1.A1_at11/114+30238872..30244261retrotransposon protein, putative, unclassified, expressed
LOC_Os04g51440Os.53481.2.S1_at11/114+30244791..30253922Villin-4, putative, expressed
LOC_Os04g51440Os.53481.1.S1_x_at11/114+30244791..30253922Villin-4, putative, expressed
LOC_Os04g51440OsAffx.3921.1.S1_x_at1/114+30244791..30253922Villin-4, putative, expressed
LOC_Os04g51450Os.51755.1.S1_at11/114+30254552..30255823Brassinosteroid-regulated protein BRU1 precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14366.1.S1_at--623--2651Chr04:30230191..30230211 (21 bp)
AAGCCAGCTTCCCTGCAAGTGTTAG
LOC_Os04g51410
OsAffx.14366.1.S1_at--224--2871Chr04:30230175..30230199 (25 bp)
AAGTGTTAGCAGTATCAGTCTCCAA
LOC_Os04g51410
OsAffx.14366.1.S1_at--512--5031Chr04:30230167..30230191 (25 bp)
GCAGTATCAGTCTCCAATAATTCAG
LOC_Os04g51410
OsAffx.14366.1.S1_at--249--3071NONE
AATAATTCAGACCTTTTGGGATTGA
NONE
OsAffx.14366.1.S1_at--740--8991Chr04:30229449..30229473 (25 bp)
TGAAGAGACTTTTCTTGGCAAGAAC
LOC_Os04g51410
OsAffx.14366.1.S1_at--950--2211Chr04:30228123..30228401 (25 bp)
ACAAGGACGTGCAGTTGTCAGGCAT
LOC_Os04g51410
OsAffx.14366.1.S1_at--539--10291Chr04:30227675..30228077 (25 bp)
TTTCGGTAGCATCAGTGTGGGCTTA
LOC_Os04g51410
OsAffx.14366.1.S1_at--125--9791Chr04:30227652..30227676 (25 bp)
TAAGTGGATTCTGGCAGGTGCAACT
LOC_Os04g51410
OsAffx.14366.1.S1_at--491--1031Chr04:30227637..30227661 (25 bp)
AGGTGCAACTTGTAGGGTTCCTGTC
LOC_Os04g51410
OsAffx.14366.1.S1_at--813--10071Chr04:30227625..30227649 (25 bp)
TAGGGTTCCTGTCATGCCAGAAGTC
LOC_Os04g51410
OsAffx.14366.1.S1_at--85--4411Chr04:30227610..30227634 (25 bp)
GCCAGAAGTCGACATTTAGCAGAAC
LOC_Os04g51410
Target Sequence 
AAGCCAGCTTCCCTGCAAGTGTTAGCAGTATCAGTCTCCAATAATTCAGACCTTTTGGGATTGAAGAGACTTTTCTTGGC
AAGAACAGAGGAAGAAAGCAGTGGAGGCAGCATACTGAAGCTTCACGAGGATGTGCAAACCTGTGGATACAAGGACGTGC
AGTTGTCAGGCATCATCATCCATCCCCCTGCCCGTCTATCCGGCAAAAGAGCGAAAATTTTCGGTAGCATCAGTGTGGGC
TTAAGTGGATTCTGGCAGGTGCAACTTGTAGGGTTCCTGTCATGCCAGAAGTCGACATTTAGCAGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14366.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis