Browse Element(s) Details


Os.51755.1.S1_at

Description gb:AK063614.1
DB_XREF= gi:32973632
TID=Os.51755.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51755 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-118-D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-118-D08, full insert sequence.
FL= gb:AK063614.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5145011/11Brassinosteroid-regulated protein BRU1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51410Os.37811.1.S1_at11/114+30226799..30232294NA
LOC_Os04g51410OsAffx.14366.1.S1_at10/114+30226799..30232294NA
LOC_Os04g51420OsAffx.13041.1.S1_at10/114+30235388..30236585transposon protein, putative, unclassified
LOC_Os04g51420OsAffx.13041.1.S1_x_at8/114+30235388..30236585transposon protein, putative, unclassified
LOC_Os04g51420OsAffx.13041.4.S1_x_at5/114+30235388..30236585transposon protein, putative, unclassified
LOC_Os04g51420OsAffx.13041.4.S1_at4/114+30235388..30236585transposon protein, putative, unclassified
LOC_Os04g51420Os.28110.1.S1_x_at1/114+30235388..30236585transposon protein, putative, unclassified
LOC_Os04g51430Os.51756.1.A1_at11/114+30238872..30244261retrotransposon protein, putative, unclassified, expressed
LOC_Os04g51440Os.53481.2.S1_at11/114+30244791..30253922Villin-4, putative, expressed
LOC_Os04g51440Os.53481.1.S1_x_at11/114+30244791..30253922Villin-4, putative, expressed
LOC_Os04g51440OsAffx.3921.1.S1_x_at1/114+30244791..30253922Villin-4, putative, expressed
LOC_Os04g51450Os.51755.1.S1_at11/114+30254552..30255823Brassinosteroid-regulated protein BRU1 precursor, putative, expressed
LOC_Os04g51460Os.11354.1.S1_at11/114+30263051..30264402xyloglucan endotransglucosylase/hydrolase protein 15precursor, putative, expressed
LOC_Os04g51460OsAffx.9796.1.S1_x_at1/114+30263051..30264402xyloglucan endotransglucosylase/hydrolase protein 15precursor, putative, expressed
LOC_Os04g51470Os.35344.3.S1_x_at11/114+30268041..30275304Transposable element protein, putative, MuDR
LOC_Os04g51470Os.35344.18.S1_x_at10/114+30268041..30275304Transposable element protein, putative, MuDR
LOC_Os04g51470OsAffx.22940.5.S1_x_at3/114+30268041..30275304Transposable element protein, putative, MuDR
LOC_Os04g51480OsAffx.26560.1.S1_at11/114+30276469..30277205expressed protein
LOC_Os04g51490OsAffx.31174.3.S1_x_at11/114+30280028..30284344hypothetical protein
LOC_Os04g51490OsAffx.31174.1.S1_at10/114+30280028..30284344hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0005618cellular_componentcell wall
GO:0005737cellular_componentcytoplasm
GO:0016762molecular_functionxyloglucan:xyloglucosyl transferase activity
GO:0016798molecular_functionhydrolase activity, acting on glycosyl bonds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51755.1.S1_at--454--7871Chr04:30255198..30255222 (25 bp)
GGTTTGATCCTACCCAGGATTTCCA
LOC_Os04g51450
Os.51755.1.S1_at--293--9451Chr04:30255161..30255183 (23 bp)
TCTGGAACCCAGACGAGATCCTGAT
LOC_Os04g51450
Os.51755.1.S1_at--743--6031Chr04:30255025..30255169 (25 bp)
GAGATCCTGATCCTGGTTGACAACA
LOC_Os04g51450
Os.51755.1.S1_at--185--8571Chr04:30255012..30255036 (25 bp)
TGGTTGACAACATGCCGATCCGGCA
LOC_Os04g51450
Os.51755.1.S1_at--1118--6351Chr04:30254996..30255020 (25 bp)
GATCCGGCAATTCAAGAACCACTTG
LOC_Os04g51450
Os.51755.1.S1_at--423--2731Chr04:30254983..30255007 (25 bp)
AAGAACCACTTGGACTCCGGCGTGC
LOC_Os04g51450
Os.51755.1.S1_at--718--1671Chr04:30254943..30254967 (25 bp)
AGCCGATGAGGCTGTTTGGCTGCCT
LOC_Os04g51450
Os.51755.1.S1_at--1124--6131Chr04:30254893..30254917 (25 bp)
GAGGGTGGCCGCATCAAGACCGACT
LOC_Os04g51450
Os.51755.1.S1_at--45--4451Chr04:30254858..30254882 (25 bp)
GCCTTTCGTGGCATACTTCCGGAAC
LOC_Os04g51450
Os.51755.1.S1_at--332--7291Chr04:30254815..30254839 (25 bp)
GTGCCGAGCTCTTATGCGTGGGTAT
LOC_Os04g51450
Os.51755.1.S1_at--246--6711Chr04:30254663..30254687 (25 bp)
GTTCCCCGATGGTTATCCAAAAGAG
LOC_Os04g51450
Target Sequence 
GGTTTGATCCTACCCAGGATTTCCACACCTACTCCGTCATCTGGAACCCAGACGAGATCCTGATCCTGGTTGACAACATG
CCGATCCGGCAATTCAAGAACCACTTGGACTCCGGCGTGCCGTTCCCGATCTACCAGCCGATGAGGCTGTTTGGCTGCCT
GTGGGACGCCGACGACTGGGCGACGGAGGGTGGCCGCATCAAGACCGACTGGTCGCAGGCGCCTTTCGTGGCATACTTCC
GGAACTACACCGCCGACGGCTGCGTGCCGAGCTCTTATGCGTGGGTATGCGGCCAGGGCCCGGCCAGCAGCAGTGACTGG
TTCGACCGGGGGCTGGACGACGTCAAGCAGCAGCAGCAGCTGAGGGAGGCCCAGGACAAGTACATGATCTACAACTACTG
CAACGACCCCGAGAGGTTCCCCGATGGTTATCCAAAAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51755.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis