Browse Element(s) Details


OsAffx.26560.1.S1_at

Description tigr:9632.m04975
TID=OsAffx.26560.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5148011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51440Os.53481.2.S1_at11/114+30244791..30253922Villin-4, putative, expressed
LOC_Os04g51440Os.53481.1.S1_x_at11/114+30244791..30253922Villin-4, putative, expressed
LOC_Os04g51440OsAffx.3921.1.S1_x_at1/114+30244791..30253922Villin-4, putative, expressed
LOC_Os04g51450Os.51755.1.S1_at11/114+30254552..30255823Brassinosteroid-regulated protein BRU1 precursor, putative, expressed
LOC_Os04g51460Os.11354.1.S1_at11/114+30263051..30264402xyloglucan endotransglucosylase/hydrolase protein 15precursor, putative, expressed
LOC_Os04g51460OsAffx.9796.1.S1_x_at1/114+30263051..30264402xyloglucan endotransglucosylase/hydrolase protein 15precursor, putative, expressed
LOC_Os04g51470Os.35344.3.S1_x_at11/114+30268041..30275304Transposable element protein, putative, MuDR
LOC_Os04g51470Os.35344.18.S1_x_at10/114+30268041..30275304Transposable element protein, putative, MuDR
LOC_Os04g51470OsAffx.22940.5.S1_x_at3/114+30268041..30275304Transposable element protein, putative, MuDR
LOC_Os04g51480OsAffx.26560.1.S1_at11/114+30276469..30277205expressed protein
LOC_Os04g51490OsAffx.31174.3.S1_x_at11/114+30280028..30284344hypothetical protein
LOC_Os04g51490OsAffx.31174.1.S1_at10/114+30280028..30284344hypothetical protein
LOC_Os04g51500Os.5041.1.S1_at11/114+30291436..30294793expressed protein
LOC_Os04g51510OsAffx.29184.2.S1_at11/114+30299849..30301033Glycosyl hydrolases family 16 protein, expressed
LOC_Os04g51520Os.50883.1.S1_at9/114+30301276..30304461Glycosyl hydrolases family 16 protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26560.1.S1_at--451--1451Chr04:30276521..30276545 (25 bp)
AGAAGGGCGTAATCTCGCCGGCAGC
LOC_Os04g51480
OsAffx.26560.1.S1_at--352--1471Chr04:30276629..30276653 (25 bp)
AGAAGGTGAGGATGCCACAGCACGA
LOC_Os04g51480
OsAffx.26560.1.S1_at--362--3411Chr04:30276646..30276670 (25 bp)
CAGCACGAGGTGGACAGAATCATGT
LOC_Os04g51480
OsAffx.26560.1.S1_at--489--3071Chr04:30276663..30276687 (25 bp)
AATCATGTCGTACAAGCACAGGCCC
LOC_Os04g51480
OsAffx.26560.1.S1_at--894--3732Chr11:24727548..24727569 (22 bp)
CTCACCATGCCACCTGGATACAAGA
NONE
OsAffx.26560.1.S1_at--746--5471Chr04:30276711..30276735 (25 bp)
GAACTTCTCCAAGGAGCTACTGGCT
LOC_Os04g51480
OsAffx.26560.1.S1_at--61--971Chr04:30276722..30276746 (25 bp)
AGGAGCTACTGGCTTGTTTCCCCGT
LOC_Os04g51480
OsAffx.26560.1.S1_at--887--2451Chr04:30276784..30276808 (25 bp)
AACAAGATACATGACGAGGGCGCGA
LOC_Os04g51480
OsAffx.26560.1.S1_at--1159--1851Chr04:30276797..30276821 (25 bp)
ACGAGGGCGCGAAACCCATCCTGGA
LOC_Os04g51480
OsAffx.26560.1.S1_at--266--10132Chr11:24727787..24727811 (25 bp)
TATGCCGAGTACTGGATCACCGACG
NONE
OsAffx.26560.1.S1_at--663--5771Chr04:30276886..30276910 (25 bp)
GACGAGGACCAAGCAGCCACTCGAT
LOC_Os04g51480
Target Sequence 
AGAAGGGCGTAATCTCGCCGGCAGCGACGGAGACGGCTGGAGAAAAGAAGGCGTCGGCAGCGGCGGCCGGAGAAGAGACG
AAGAAGAAGCAAAAGGAGAAGAAGATGAAGAAGGTGAGGATGCCACAGCACGAGGTGGACAGAATCATGTCGTACAAGCA
CAGGCCCCTCACCATGCCACCTGGATACAAGAACTTCTCCAAGGAGCTACTGGCTTGTTTCCCCGTGCCCGTCGATCAGC
TGGACGACTACTGGGCTAGAAAGAACAAGATACATGACGAGGGCGCGAAACCCATCCTGGAGGAGCAGGAGAGGATTCGC
AAGGAGTACAATGAGAAAGGCTATGCCGAGTACTGGATCACCGACGACGAGGACCAAGCAGCCACTCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26560.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis