Browse Element(s) Details


Os.50883.1.S1_at

Description gb:AK059203.1
DB_XREF= gi:32969221
TID=Os.50883.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50883 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-024-A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-024-A11, full insert sequence.
FL= gb:AK059203.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g515209/11Glycosyl hydrolases family 16 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51480OsAffx.26560.1.S1_at11/114+30276469..30277205expressed protein
LOC_Os04g51490OsAffx.31174.3.S1_x_at11/114+30280028..30284344hypothetical protein
LOC_Os04g51490OsAffx.31174.1.S1_at10/114+30280028..30284344hypothetical protein
LOC_Os04g51500Os.5041.1.S1_at11/114+30291436..30294793expressed protein
LOC_Os04g51510OsAffx.29184.2.S1_at11/114+30299849..30301033Glycosyl hydrolases family 16 protein, expressed
LOC_Os04g51520Os.50883.1.S1_at9/114+30301276..30304461Glycosyl hydrolases family 16 protein, expressed
LOC_Os04g51530NANA4+30307162..30310450retrotransposon protein, putative, unclassified
LOC_Os04g51540NANA4+30311074..30317228retrotransposon protein, putative, unclassified
LOC_Os04g51550NANA4+30317862..30318772retrotransposon protein, putative, unclassified
LOC_Os04g51560Os.49549.1.S1_at11/114+30326094..30327436WRKY DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009664biological_processcell wall organization and biogenesis (sensu Magnoliophyta)
GO:0005618cellular_componentcell wall
GO:0005737cellular_componentcytoplasm
GO:0016798molecular_functionhydrolase activity, acting on glycosyl bonds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50883.1.S1_at--480--3471Chr04:30301775..30301799 (25 bp)
CAGGTGAAGATCAACTGGACCGCCG
LOC_Os04g51520
Os.50883.1.S1_at--909--7551Chr04:30301561..30301585 (25 bp)
GGGCGCGGGCGAACTACATGATCTA
LOC_Os04g51520
Os.50883.1.S1_at--265--451Chr04:30301541..30301565 (25 bp)
ATCTACGATTACTGCGGCGACCAAT
LOC_Os04g51520
Os.50883.1.S1_at--504--2991Chr04:30301489..30301513 (25 bp)
AATGTAGCCTCGACCAGAGTTCCGG
LOC_Os04g51520
Os.50883.1.S1_at--153--91Chr04:30301439..30301463 (25 bp)
ATTGCCTCCGTGCTGTTCTAGCATT
LOC_Os04g51520
Os.50883.1.S1_at--1114--4731NONE
GCTGTTCTAGCATTCACGATACTGT
NONE
Os.50883.1.S1_at--530--1871NONE
ACGATACTGTAACTTGATCTCTACT
NONE
Os.50883.1.S1_at--1096--8831Chr04:30301399..30301423 (25 bp)
TGATCTCTACTGTACTTCACAATGT
LOC_Os04g51520
Os.50883.1.S1_at--698--7091Chr04:30301376..30301400 (25 bp)
GTCACATGATCGTAAATCTCCTCAA
LOC_Os04g51520
Os.50883.1.S1_at--74--10111Chr04:30301346..30301370 (25 bp)
TATGGCACATGGTACATGACACCAA
LOC_Os04g51520
Os.50883.1.S1_at--636--2671Chr04:30301311..30301335 (25 bp)
AAGCGGATTAACGAAGTCCCAACAT
LOC_Os04g51520
Target Sequence 
CAGGTGAAGATCAACTGGACCGCCGCGCCGTTCGTCGCGTCGTACCGGACCTACGCCTACAGCGCCTGCGCCGTGCCGGC
GGCCGGCGGCGGTGGCGGCGGCCCGTGCACGTCCGGCCAGCTACCGAATTCCACGTCGTCGCCGTCGACGTGCGACTGCG
GCGGCGCGTGGATGGACAGGCAGCTCGGCGCCGACGGCGAGCGCGACGTGGCGTGGGCGCGGGCGAACTACATGATCTAC
GATTACTGCGGCGACCAATGGCGGTTCCCGCAGGGCCTTCCGGCCGAATGTAGCCTCGACCAGAGTTCCGGCCATCGCAC
ATAGCCGGAGCCGGCCATTGCCTCCGTGCTGTTCTAGCATTCACGATACTGTAACTTGATCTCTACTGTACTTCACAATG
TCACATGATCGTAAATCTCCTCAAATTCATATGGCACATGGTACATGACACCAAGAACAATAATAAGCGGATTAACGAAG
TCCCAACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50883.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis