Browse Element(s) Details


Os.53762.1.S1_at

Description gb:AK099806.1
DB_XREF= gi:32985015
TID=Os.53762.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53762 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013098F17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013098F17, full insert sequence.
FL= gb:AK099806.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2608011/11GDA1/CD39 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g26030OsAffx.25229.1.S1_x_at10/113+14894316..14903035expressed protein
LOC_Os03g26044Os.23303.1.A1_at11/113+14903961..14909158Glycosyltransferase, putative, expressed
LOC_Os03g26044Os.56873.1.S1_x_at10/113+14903961..14909158Glycosyltransferase, putative, expressed
LOC_Os03g26044Os.56873.1.S1_at10/113+14903961..14909158Glycosyltransferase, putative, expressed
LOC_Os03g26060OsAffx.13040.1.S1_at10/113+14912636..14914520hypothetical protein
LOC_Os03g26070OsAffx.25230.1.S1_at11/113+14915437..14916781hypothetical protein
LOC_Os03g26080Os.53762.1.S1_at11/113+14917235..14921065GDA1/CD39 family protein, expressed
LOC_Os03g26090Os.52953.1.S1_at11/113+14925421..14932055GWT1 family protein, expressed
LOC_Os03g26100OsAffx.13041.4.S1_x_at11/113+14933627..14934301transposon protein, putative, unclassified
LOC_Os03g26100OsAffx.13041.4.S1_at9/113+14933627..14934301transposon protein, putative, unclassified
LOC_Os03g26100OsAffx.13041.1.S1_at9/113+14933627..14934301transposon protein, putative, unclassified
LOC_Os03g26100OsAffx.13041.1.S1_x_at6/113+14933627..14934301transposon protein, putative, unclassified
LOC_Os03g26100Os.28110.1.S1_x_at1/113+14933627..14934301transposon protein, putative, unclassified
LOC_Os03g26120OsAffx.13042.1.S1_at10/113+14942489..14943389hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53762.1.S1_at--126--10371Chr03:14920376..14920400 (25 bp)
TTTTTCACGTTATTGCTTCTCATCC
LOC_Os03g26080
Os.53762.1.S1_at--703--3531Chr03:14920396..14920420 (25 bp)
CATCCGCATATATTGTAGCTCTACT
LOC_Os03g26080
Os.53762.1.S1_at--241--9031Chr03:14920420..14920444 (25 bp)
TGCACGACAGTCTTGGTGTACCACT
LOC_Os03g26080
Os.53762.1.S1_at--1084--2151Chr03:14920582..14920606 (25 bp)
ACACTCAAGTTGAATGGGCCCTGGG
LOC_Os03g26080
Os.53762.1.S1_at--1027--391Chr03:14920646..14920670 (25 bp)
ATCAGCAACTGGTAGATCAGCCCAT
LOC_Os03g26080
Os.53762.1.S1_at--219--6451Chr03:14920660..14920684 (25 bp)
GATCAGCCCATAGAAGTAGACCATT
LOC_Os03g26080
Os.53762.1.S1_at--324--10571Chr03:14920708..14920732 (25 bp)
TTCTTCTAGGTGGAGCACTTTGCTT
LOC_Os03g26080
Os.53762.1.S1_at--733--2951Chr03:14920780..14920804 (25 bp)
AAGGCCGGTACATAATCACACGCAT
LOC_Os03g26080
Os.53762.1.S1_at--527--1611Chr03:14920806..14920830 (25 bp)
AGCTGACGCTGACCTTTGTGCAGAG
LOC_Os03g26080
Os.53762.1.S1_at--280--6751Chr03:14920888..14920912 (25 bp)
GTTCAATTCTTTGTATTCTTTCTCC
LOC_Os03g26080
Os.53762.1.S1_at--901--2611Chr03:14921027..14921051 (25 bp)
AACCTAGCTTTGCTCATGTACGTGA
LOC_Os03g26080
Target Sequence 
TTTTTCACGTTATTGCTTCTCATCCGCATATATTGTAGCTCTACTGCACGACAGTCTTGGTGTACCACTGGATGACAAGA
GGATTGAGTATTCAAATCAGGTTGGAGACACTCAAGTTGAATGGGCCCTGGGGGCTTTCATCTCAAACATAAAAGGCGTA
ATTGTAGAGCCATCAGCAACTGGTAGATCAGCCCATAGAAGTAGACCATTGCTTGCTGTGCTGCTGGGGGTGTTTCTTCT
AGGTGGAGCACTTTGCTTGGCAAGATGGAGGAAGCCCAAGACGAAGATCATATACGACTTGGAGAAAGGCCGGTACATAA
TCACACGCATCAGCTGACGCTGACCTTTGTGCAGAGGAATCACATATATATACGACAGGAATAGATGTTTGTTATGTGTA
CCATAGTGTACGAGTTCAATTCTTTGTATTCTTTCTCCTTTTTAAGAGCTGGGTGGGAGCCTTAGAGGAGAGATCAAGGA
TAGCATGTGTGTATGTACAGGACTTGTAGAGCATTTTGCCATTTACTTATTCTATTTANNNGATGATGGAATAACCTAGC
TTTGCTCATGTACGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53762.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis