Browse Element(s) Details


Os.7952.1.S1_at

Description gb:AK101213.1
DB_XREF= gi:32986422
TID=Os.7952.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.7952 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033031B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033031B03, full insert sequence.
FL= gb:AK101213.1 gb:AK062562.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2598011/11Polypyrimidine tract-binding protein homolog 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g25940Os.4789.1.S1_at11/113+14829048..14833256Cys/Met metabolism PLP-dependent enzyme family protein, expressed
LOC_Os03g25950OsAffx.13038.1.S1_at11/113+14842108..14844277hypothetical protein
LOC_Os03g25960Os.30049.1.S1_at11/113+14845419..14847519RNA recognition motif family protein, expressed
LOC_Os03g25970Os.27508.1.S1_a_at11/113+14850789..14855418KH domain-containing protein, putative, expressed
LOC_Os03g25970Os.27508.1.S2_a_at11/113+14850789..14855418KH domain-containing protein, putative, expressed
LOC_Os03g25980Os.7952.1.S1_at11/113+14857514..14862345Polypyrimidine tract-binding protein homolog 1, putative, expressed
LOC_Os03g25984NANA3+14867844..14868407hypothetical protein
LOC_Os03g25990NANA3+14873554..14874807Alpha-expansin 15 precursor, putative, expressed
LOC_Os03g26000Os.8290.1.S1_at3/113+14878666..14885409expressed protein
LOC_Os03g26010NANA3+14886347..14887722retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7952.1.S1_at--742--9851Chr03:14861785..14861809 (25 bp)
TACACAATCCCTCAAGGTGCGATGC
LOC_Os03g25980
Os.7952.1.S1_at--622--7751Chr03:14861830..14861854 (25 bp)
GGTGTACCAACAACATCTGCTGGGT
LOC_Os03g25980
Os.7952.1.S1_at--14--5251Chr03:14861943..14861967 (25 bp)
GAATCCCGGGAACTCTGGGTATGCT
LOC_Os03g25980
Os.7952.1.S1_at--256--1591Chr03:14861970..14861994 (25 bp)
AGCTCCAGGAGCATATCCAGGTCAA
LOC_Os03g25980
Os.7952.1.S1_at--204--7091Chr03:14861990..14862014 (25 bp)
GTCAAATGTACTCGTCACCAATGCA
LOC_Os03g25980
Os.7952.1.S1_at--135--2791Chr03:14862059..14862083 (25 bp)
AAGAGTTGCATACTTCGCAGCAGAT
LOC_Os03g25980
Os.7952.1.S1_at--669--6351Chr03:14862081..14862105 (25 bp)
GATGCCGCCGCCTCAATATGGAAAT
LOC_Os03g25980
Os.7952.1.S1_at--539--2291Chr03:14862181..14862205 (25 bp)
AACTGGTACTATGCCCTTTCTAATT
LOC_Os03g25980
Os.7952.1.S1_at--739--7051Chr03:14862207..14862231 (25 bp)
GTAACTTTGTGTACCTTTGCAATAG
LOC_Os03g25980
Os.7952.1.S1_at--8--7151Chr03:14862255..14862279 (25 bp)
GTCTTTCTTCTCATGGAACCTTTTT
LOC_Os03g25980
Os.7952.1.S1_at--436--2391Chr03:14862287..14862311 (25 bp)
AAACTCTTCATCCAGTTGTTCTCAT
LOC_Os03g25980
Target Sequence 
TACACAATCCCTCAAGGTGCGATGCAAGCAGTACCACAACCGCCTGGTGTACCAACAACATCTGCTGGGTGGCAAGGTAA
TCCACAAGCCGGTGGTGCATATGCACCACCTGGNAGCTGCTGCTCCAAACCACGGCACAACAGGGCAAGTGCCAAATTGG
AATCCCGGGAACTCTGGGTATGCTCCAGCTCCAGGAGCATATCCAGGTCAAATGTACTCGTCACCAATGCAGTATGGCGC
ATCAGGGGGCTTCTCTGCTCCTGCTGCCCCACCACAAGAGTTGCATACTTCGCAGCAGATGCCGCCGCCTCAATATGGAA
ATCAGCCTGGACCAGCAGGTGCACCAGGAACCGGGCAACCACATCCATATTATCGCTAAATTTAGATTCCTATTCACAAC
TGGTACTATGCCCTTTCTAATTAGTAACTTTGTGTACCTTTGCAATAGGGCAAAACCAGTTCCTTTTCCCTGTCTTTCTT
CTCATGGAACCTTTTTTATAAATAAACTCTTCATCCAGTTGTTCTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7952.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis