Browse Element(s) Details


Os.30049.1.S1_at

Description gb:AK068720.1
DB_XREF= gi:32978737
TID=Os.30049.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30049 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-303-G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013169L09, full insert sequence.
FL= gb:AK109412.2 gb:AK068720.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2596011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g25930Os.50934.1.S1_at10/113+14822585..14826107emp24/gp25L/p24 family protein, expressed
LOC_Os03g25940Os.4789.1.S1_at11/113+14829048..14833256Cys/Met metabolism PLP-dependent enzyme family protein, expressed
LOC_Os03g25950OsAffx.13038.1.S1_at11/113+14842108..14844277hypothetical protein
LOC_Os03g25960Os.30049.1.S1_at11/113+14845419..14847519RNA recognition motif family protein, expressed
LOC_Os03g25970Os.27508.1.S1_a_at11/113+14850789..14855418KH domain-containing protein, putative, expressed
LOC_Os03g25970Os.27508.1.S2_a_at11/113+14850789..14855418KH domain-containing protein, putative, expressed
LOC_Os03g25980Os.7952.1.S1_at11/113+14857514..14862345Polypyrimidine tract-binding protein homolog 1, putative, expressed
LOC_Os03g25984NANA3+14867844..14868407hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006396biological_processRNA processing
GO:0009507cellular_componentchloroplast
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30049.1.S1_at--459--5191Chr03:14846076..14846100 (25 bp)
GCAATCATCGCAGAGAGCACCCAGG
LOC_Os03g25960
Os.30049.1.S1_at--65--1591Chr03:14845998..14846022 (25 bp)
AGCTCTCGCAAACCTATTCAGTGGG
LOC_Os03g25960
Os.30049.1.S1_at--743--8731Chr03:14845905..14845929 (25 bp)
TGTCACGTATGGTTCCGCTGAAGAG
LOC_Os03g25960
Os.30049.1.S1_at--1145--9691Chr03:14845761..14845889 (25 bp)
TCAAATCTTGATGGCGCTGACATGG
LOC_Os03g25960
Os.30049.1.S1_at--483--6951Chr03:14845713..14845737 (25 bp)
GTAGCAGAATCGAAACCACCTAGGA
LOC_Os03g25960
Os.30049.1.S1_at--302--31Chr03:14845682..14845706 (25 bp)
ATTGAAATTCGTTTAGATGCCCTGA
LOC_Os03g25960
Os.30049.1.S1_at--139--611Chr03:14845666..14845690 (25 bp)
ATGCCCTGAAGCCTATGGTTAGTCC
LOC_Os03g25960
Os.30049.1.S1_at--292--5211Chr03:14845596..14845620 (25 bp)
GAATTCTAGTCGTAACTTCCACCAT
LOC_Os03g25960
Os.30049.1.S1_at--553--6791Chr03:14845499..14845523 (25 bp)
GTTATGTATGGCTTGTTCCTTGAAT
LOC_Os03g25960
Os.30049.1.S1_at--606--6072Chr11:19540252..19540272 (21 bp)
GAGTAAAGTGCACGGCCGGTCTCTA
NONE
Os.30049.1.S1_at--1075--2391Chr03:14845446..14845470 (25 bp)
AAACTTGTGCTATTCAGGTCTCATA
LOC_Os03g25960
Target Sequence 
GCAATCATCGCAGAGAGCACCCAGGGGTGAGGCCAACAGGGTCTATGTAGGTAACCTTTCTTGGGGTGTTGACAATGCAG
CTCTCGCAAACCTATTCAGTGGGGAAGGGGAGGTCTTGGAAGCCAAGGTCATCTATGACAGGGAGAGTGGCAGGTCAAGG
GGATTTGGTTTTGTCACGTATGGTTCCGCTGAAGAGGTTGAGAATGCAGTTTCAAATCTTGATGGCGCTGACATGGATGG
CAGACAGATCCGAGTTACAGTAGCAGAATCGAAACCACCTAGGAGACAATATTGAAATTCGTTTAGATGCCCTGAAGCCT
ATGGTTAGTCCAGATATGAATCATACTATCGTCATGATTGTTCTATAGCATCGATGGAATTCTAGTCGTAACTTCCACCA
TATGGTTCAAAAGATTGGTTTGGTGATGAGATATATATCATTTTGTTTTAACTTTTTGAACCCACTTTTTTTTGTTATGT
ATGGCTTGTTCCTTGAATTATAGAGTAAAGTGCACGGCCGGTCTCTAAACTTGTGCTATTCAGGTCTCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30049.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis