Browse Element(s) Details


OsAffx.3720.1.S1_at

Description tigr:9632.m00373
TID=OsAffx.3720.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to histidine decarboxylase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g046408/11Histidine decarboxylase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g04600OsAffx.20733.1.A1_x_at5/114+2186245..2189129retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g04600Os.47114.1.S1_x_at1/114+2186245..2189129retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g04610NANA4+2191444..2193325expressed protein
LOC_Os04g04620OsAffx.10020.1.S1_x_at2/114+2203292..2203708retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g04640OsAffx.3720.1.S1_at8/114+2208008..2221395Histidine decarboxylase, putative
LOC_Os04g04640OsAffx.4841.1.S1_at1/114+2208008..2221395Histidine decarboxylase, putative
LOC_Os04g04650OsAffx.3721.1.S1_at10/114+2223703..2224588hypothetical protein
LOC_Os04g04660OsAffx.13666.1.S1_at10/114+2230570..2232034hypothetical protein
LOC_Os04g04670OsAffx.25863.1.S1_at1/114+2234045..2239385Protein kinase domain containing protein
LOC_Os04g04680OsAffx.13667.1.S1_at11/114+2240746..2241648hypothetical protein
LOC_Os04g04690OsAffx.13668.1.S1_x_at11/114+2243068..2243771Legume lectins beta domain containing protein
LOC_Os04g04700NANA4+2245801..2247497retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006520biological_processamino acid metabolism
GO:0016831molecular_functioncarboxy-lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3720.1.S1_at--59--5611NONE
GACAATATCAATGTTAGCGCCGACA
NONE
OsAffx.3720.1.S1_at--214--4571Chr04:2218526..2218550 (25 bp)
GCGCCGACACTTGGGACTGTTGGAA
LOC_Os04g04640
OsAffx.3720.1.S1_at--43--5771NONE
GACGAGGCGAAATGCTGGCTACCCA
NONE
OsAffx.3720.1.S1_at--525--4711NONE
GCTGGCTACCCAATCAATTTCGAAT
NONE
OsAffx.3720.1.S1_at--449--2671Chr04:2215047..2215071 (25 bp)
AATTTCGAATTTGACTTTGGCCCTG
LOC_Os04g04640
OsAffx.3720.1.S1_at--982--1391Chr04:2215018..2215042 (25 bp)
AGAATTCCTAAACATGCGCCTAAAT
LOC_Os04g04640
OsAffx.3720.1.S1_at--548--4131Chr04:2215002..2215026 (25 bp)
CGCCTAAATAATGCTGGTGACCCTT
LOC_Os04g04640
OsAffx.3720.1.S1_at--24--3471Chr04:2214932..2214956 (25 bp)
CAGTGTTAGATTGGTTCGCTCGGTT
LOC_Os04g04640
OsAffx.3720.1.S1_at--893--7611Chr04:2214905..2214929 (25 bp)
GGGAACTCCCCAAAGACCAATACTG
LOC_Os04g04640
OsAffx.3720.1.S1_at--574--2091Chr04:2214850..2214872 (23 bp)
ACATGCACGGACTTCTTGTTGGGAG
LOC_Os04g04640
OsAffx.3720.1.S1_at--648--5631Chr04:2212969..2213169 (25 bp)
GACACTTTGTTTTCTGGTACTACTA
LOC_Os04g04640
Target Sequence 
GACAATATCAATGTTAGCGCCGACACTTGGGACTGTTGGAAGGATCAATGAAGAGTCGAGGACGAGGCGAAATGCTGGCT
ACCCAATCAATTTCGAATTTGACTTTGGCCCTGTAATAGAATTCCTAAACATGCGCCTAAATAATGCTGGTGACCCTTTT
ATGGAGTGCAACTATGGTATCCATTCAAAAAAGTTTGAAATTGCAGTGTTAGATTGGTTCGCTCGGTTGTGGGAACTCCC
CAAAGACCAATACTGGGGCTATGTCACTAGCGGTGGAACGGAAGGGAACATGCACGGACTTCTTGTTGGGAGAGAACTTT
TTCCGGAGGGGATTATCTATACATCATGTGATTCACATTATTCTATTTTCAAGGCTGCTAAAATGTATAGAGTCCAGTGC
ATCAAAATTGACACTTTGTTTTCTGGTACTACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3720.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis