Browse Element(s) Details


OsAffx.13667.1.S1_at

Description tigr:9632.m00378
TID=OsAffx.13667.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0468011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g04640OsAffx.3720.1.S1_at8/114+2208008..2221395Histidine decarboxylase, putative
LOC_Os04g04640OsAffx.4841.1.S1_at1/114+2208008..2221395Histidine decarboxylase, putative
LOC_Os04g04650OsAffx.3721.1.S1_at10/114+2223703..2224588hypothetical protein
LOC_Os04g04660OsAffx.13666.1.S1_at10/114+2230570..2232034hypothetical protein
LOC_Os04g04670OsAffx.25863.1.S1_at1/114+2234045..2239385Protein kinase domain containing protein
LOC_Os04g04680OsAffx.13667.1.S1_at11/114+2240746..2241648hypothetical protein
LOC_Os04g04690OsAffx.13668.1.S1_x_at11/114+2243068..2243771Legume lectins beta domain containing protein
LOC_Os04g04700NANA4+2245801..2247497retrotransposon protein, putative, unclassified
LOC_Os04g04710NANA4+2247699..2250509retrotransposon protein, putative, unclassified
LOC_Os04g04720NANA4+2254019..2259642retrotransposon protein, putative, unclassified
LOC_Os04g04730NANA4+2260562..2263176retrotransposon protein, putative, unclassified
LOC_Os04g04740OsAffx.3722.1.S1_at11/114+2266333..2266704hypothetical protein
LOC_Os04g04740OsAffx.3722.1.S1_x_at11/114+2266333..2266704hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13667.1.S1_at--958--7271Chr04:2240782..2240896 (25 bp)
GTGCCGTTTGACAGGTCGGTCAACC
LOC_Os04g04680
OsAffx.13667.1.S1_at--1088--9431Chr04:2240887..2240910 (24 bp)
TCGGTCAACCTCCTTGATCTAGGTA
LOC_Os04g04680
OsAffx.13667.1.S1_at--301--10051Chr04:2241422..2241446 (25 bp)
TAGGTACTATTGCAAGGACGAGAAC
LOC_Os04g04680
OsAffx.13667.1.S1_at--711--2651Chr04:2241448..2241472 (25 bp)
AAGCCAGTTCTAAGCCTATCGAAGA
LOC_Os04g04680
OsAffx.13667.1.S1_at--924--1371Chr04:2241475..2241499 (25 bp)
AGACCACAACTAGAGCATGAACCGT
LOC_Os04g04680
OsAffx.13667.1.S1_at--178--671Chr04:2241491..2241515 (25 bp)
ATGAACCGTCACAACCAACACAAAA
LOC_Os04g04680
OsAffx.13667.1.S1_at--460--2191Chr04:2241510..2241534 (25 bp)
ACAAAAGGGTGTCCACGCAGAATAT
LOC_Os04g04680
OsAffx.13667.1.S1_at--947--10111Chr04:2241532..2241556 (25 bp)
TATGTGCCCGAAATAGACGCTGAAC
LOC_Os04g04680
OsAffx.13667.1.S1_at--912--5431Chr04:2241553..2241577 (25 bp)
GAACCGACGCTGATAGAGGCCAATC
LOC_Os04g04680
OsAffx.13667.1.S1_at--258--8451Chr04:2241570..2241594 (25 bp)
GGCCAATCTGACTCAAGCTGCGGAA
LOC_Os04g04680
OsAffx.13667.1.S1_at--674--2831Chr04:2241593..2241617 (25 bp)
AAGTTATCGGTGCTGGCGCTCAGCT
LOC_Os04g04680
Target Sequence 
GTGCCGTTTGACAGGTCGGTCAACCTCCTTGATCTAGGTACTATTGCAAGGACGAGAACAAAGCCAGTTCTAAGCCTATC
GAAGAGAAGACCACAACTAGAGCATGAACCGTCACAACCAACACAAAAGGGTGTCCACGCAGAATATGTGCCCGAAATAG
ACGCTGAACCGACGCTGATAGAGGCCAATCTGACTCAAGCTGCGGAAGTTATCGGTGCTGGCGCTCAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13667.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis