Browse Element(s) Details


OsAffx.3722.1.S1_at

Description tigr:9632.m00384
TID=OsAffx.3722.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0474011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g04680OsAffx.13667.1.S1_at11/114+2240746..2241648hypothetical protein
LOC_Os04g04690OsAffx.13668.1.S1_x_at11/114+2243068..2243771Legume lectins beta domain containing protein
LOC_Os04g04700NANA4+2245801..2247497retrotransposon protein, putative, unclassified
LOC_Os04g04710NANA4+2247699..2250509retrotransposon protein, putative, unclassified
LOC_Os04g04720NANA4+2254019..2259642retrotransposon protein, putative, unclassified
LOC_Os04g04730NANA4+2260562..2263176retrotransposon protein, putative, unclassified
LOC_Os04g04740OsAffx.3722.1.S1_at11/114+2266333..2266704hypothetical protein
LOC_Os04g04740OsAffx.3722.1.S1_x_at11/114+2266333..2266704hypothetical protein
LOC_Os04g04750OsAffx.13669.1.S1_at11/114+2269017..2272134Peroxidase family protein, expressed
LOC_Os04g04760OsAffx.13670.1.S1_at11/114+2275067..2276084hypothetical protein
LOC_Os04g04770OsAffx.13668.1.S1_x_at1/114+2279193..2280068Legume lectins beta domain containing protein
LOC_Os04g04780OsAffx.13671.1.S1_x_at11/114+2281349..2281638expressed protein
LOC_Os04g04790OsAffx.13672.1.S1_at10/114+2282838..2286662hypothetical protein
LOC_Os04g04800OsAffx.25862.2.S1_at9/114+2287918..2289845Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3722.1.S1_at--632--3911Chr04:2266371..2266395 (25 bp)
CTGGCGTCGAACTCCGAAGGGCAGC
LOC_Os04g04740
OsAffx.3722.1.S1_at--679--4651Chr04:2266374..2266398 (25 bp)
GCGTCGAACTCCGAAGGGCAGCGAT
LOC_Os04g04740
OsAffx.3722.1.S1_at--953--9351Chr04:2266377..2266401 (25 bp)
TCGAACTCCGAAGGGCAGCGATGTA
LOC_Os04g04740
OsAffx.3722.1.S1_at--503--3391Chr04:2266392..2266416 (25 bp)
CAGCGATGTACTGGTCCACGGCGGC
LOC_Os04g04740
OsAffx.3722.1.S1_at--78--4711Chr04:2266412..2266436 (25 bp)
GCGGCGATGCCTTTCCGGCGACGAG
LOC_Os04g04740
OsAffx.3722.1.S1_at--648--4771Chr04:2266474..2266498 (25 bp)
GCTGCGATCCCGGTGGTAGCAACGT
LOC_Os04g04740
OsAffx.3722.1.S1_at--1054--531Chr04:2266480..2266504 (25 bp)
ATCCCGGTGGTAGCAACGTCACATA
LOC_Os04g04740
OsAffx.3722.1.S1_at--808--7731Chr04:2266485..2266509 (25 bp)
GGTGGTAGCAACGTCACATAGCGGA
LOC_Os04g04740
OsAffx.3722.1.S1_at--866--10011Chr04:2266490..2266514 (25 bp)
TAGCAACGTCACATAGCGGAGGCGA
LOC_Os04g04740
OsAffx.3722.1.S1_at--1069--3251Chr04:2266493..2266517 (25 bp)
CAACGTCACATAGCGGAGGCGACCG
LOC_Os04g04740
OsAffx.3722.1.S1_at--1104--9992Chr04:2266503..2266527 (25 bp)
TAGCGGAGGCGACCGAGGCGATGAC
LOC_Os04g04740
Target Sequence 
CTGGCGTCGAACTCCGAAGGGCAGCGATGTACTGGTCCACGGCGGCGATGCCTTTCCGGCGACGAGCGGCGGCAACAGAG
GGGTGGCCGGGCTTCTCCTCGGCGCTGCGATCCCGGTGGTAGCAACGTCACATAGCGGAGGCGACCGAGGCGATGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3722.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis