Browse Element(s) Details


OsAffx.25862.2.S1_at

Description tigr:9632.m00244
TID=OsAffx.25862.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0337011/11Protein kinase domain containing protein
LOC_Os04g048009/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g03330NANA4+1407049..1410393transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g03340Os.46306.1.S1_x_at4/114+1418260..1420484transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g03350NANA4+1425527..1429095transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g03360OsAffx.13641.1.S1_at11/114+1431183..1432023Jacalin-like lectin domain containing protein
LOC_Os04g03370OsAffx.25862.2.S1_at11/114+1433828..1435758Protein kinase domain containing protein
LOC_Os04g03380OsAffx.13668.1.S1_x_at10/114+1438871..1439586Legume lectins beta domain containing protein
LOC_Os04g03390OsAffx.13643.1.S1_at11/114+1441154..1441815hypothetical protein
LOC_Os04g03400NANA4+1442378..1444203transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g03410OsAffx.1674.1.S1_at1/114+1447978..1452114retrotransposon protein, putative, unclassified
LOC_Os04g03420OsAffx.8268.1.S1_at1/114+1454363..1456364retrotransposon protein, putative, unclassified
LOC_Os04g03430OsAffx.13644.1.S1_at11/114+1458180..1459312hypothetical protein
LOC_Os04g03430OsAffx.26961.1.S1_x_at1/114+1458180..1459312hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25862.2.S1_at--1008--2591Chr04:1434394..1434418 (25 bp)
AAGCCAAGAAACGTACTCCTAGACA
LOC_Os04g03370
OsAffx.25862.2.S1_at--173--8592Chr04:2289329..2289353 (25 bp)
TGGTTTGTCAAGGATCGCGAAGCTT
LOC_Os04g04800
OsAffx.25862.2.S1_at--169--4932Chr04:2289350..2289374 (25 bp)
GCTTGACAATGATCCAACGTCGTTG
LOC_Os04g04800
OsAffx.25862.2.S1_at--1041--11Chr04:1434260..1434284 (25 bp)
ATTGACAACTGCTGTAGGACCGGTA
LOC_Os04g03370
OsAffx.25862.2.S1_at--971--2812Chr04:2289474..2289498 (25 bp)
AAGTTCAACCCCTACTCAGACGTGT
LOC_Os04g04800
OsAffx.25862.2.S1_at--471--4012Chr04:2289512..2289536 (25 bp)
CGTCCTGTTGGAGATCGCGTGCAAA
LOC_Os04g04800
OsAffx.25862.2.S1_at--1053--1272Chr04:2289553..2289577 (25 bp)
AGATCTGCAGCCTGTACCGAAGCAA
LOC_Os04g04800
OsAffx.25862.2.S1_at--97--7192Chr04:2289694..2289718 (25 bp)
GTCGGCCTACCATGCAGGAAGCAAT
LOC_Os04g04800
OsAffx.25862.2.S1_at--145--5552Chr04:2289719..2289743 (25 bp)
GAAACTACTTCTGGAGCCTGATGCC
LOC_Os04g04800
OsAffx.25862.2.S1_at--133--4972Chr04:2289777..2289801 (25 bp)
GCATCAGTCTCATCAGTCCATGACG
LOC_Os04g04800
OsAffx.25862.2.S1_at--895--3812Chr04:2289803..2289827 (25 bp)
CTCCAGGGCTTCTATTGCCAATAGA
LOC_Os04g04800
Target Sequence 
AAGCCAAGAAACGTACTCCTAGACAAAGAATATAATGTCAAGCTTGCCGACTTTGGTTTGTCAAGGATCGCGAAGCTTGA
CAATGATCCAACGTCGTTGCAAACAACTGTAGTAGGCACTGTGGAAGGGTGTGTATTGACAACTGCTGTAGGACCGGTAG
ATTACATGGATCCACAGTGCAAGAAAGATGGCAAGGTCAAGTTCAACCCCTACTCAGACGTGTTCAGCTTCGGCCTCGTC
CTGTTGGAGATCGCGTGCAAAGACATATCCAGGGAGCAGATCTGCAGCCTGTACCGAAGCAAAGGTGATGTCGTGGAGGC
TACGGACCAAAGGGTAAAGATTGTTGGTGACTCTGAAAGGAGGGAGATGGAGAGTGTCATCATCTTGGGGCTCTGGTGCT
CTGCTTCTGACACTCAGCGTCGGCCTACCATGCAGGAAGCAATGAAACTACTTCTGGAGCCTGATGCCACCTTGCCTGAC
CTTAACTTCATCACCAACTCTGCATCAGTCTCATCAGTCCATGACGCCTCCAGGGCTTCTATTGCCAATAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25862.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis