Browse Element(s) Details


OsAffx.13641.1.S1_at

Description tigr:9632.m00243
TID=OsAffx.13641.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Jacalin-like lectin domain
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0336011/11Jacalin-like lectin domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g03330NANA4+1407049..1410393transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g03340Os.46306.1.S1_x_at4/114+1418260..1420484transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g03350NANA4+1425527..1429095transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g03360OsAffx.13641.1.S1_at11/114+1431183..1432023Jacalin-like lectin domain containing protein
LOC_Os04g03370OsAffx.25862.2.S1_at11/114+1433828..1435758Protein kinase domain containing protein
LOC_Os04g03380OsAffx.13668.1.S1_x_at10/114+1438871..1439586Legume lectins beta domain containing protein
LOC_Os04g03390OsAffx.13643.1.S1_at11/114+1441154..1441815hypothetical protein
LOC_Os04g03400NANA4+1442378..1444203transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g03410OsAffx.1674.1.S1_at1/114+1447978..1452114retrotransposon protein, putative, unclassified
LOC_Os04g03420OsAffx.8268.1.S1_at1/114+1454363..1456364retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13641.1.S1_at--925--4091Chr04:1431221..1431245 (25 bp)
CGACTACTACATCCAACAACAGCAG
LOC_Os04g03360
OsAffx.13641.1.S1_at--151--5051Chr04:1431242..1431266 (25 bp)
GCAGCAACATGGAGGACGTGATCGC
LOC_Os04g03360
OsAffx.13641.1.S1_at--813--2151Chr04:1431278..1431302 (25 bp)
ACAGCTCAAGCTCATGAACCATGGT
LOC_Os04g03360
OsAffx.13641.1.S1_at--852--2691Chr04:1431285..1431309 (25 bp)
AAGCTCATGAACCATGGTCCATGGG
LOC_Os04g03360
OsAffx.13641.1.S1_at--656--3231Chr04:1431312..1431336 (25 bp)
CAAGCGTCTTCCTACAATTCCATAG
LOC_Os04g03360
OsAffx.13641.1.S1_at--1100--3151Chr04:1431327..1431350 (24 bp)
AATTCCATAGCCGTCCGTGATGAGA
LOC_Os04g03360
OsAffx.13641.1.S1_at--708--9991Chr04:1431334..1431773 (25 bp)
TAGCCGTCCGTGATGAGATCAAGTT
LOC_Os04g03360
OsAffx.13641.1.S1_at--1158--5531Chr04:1431879..1431903 (25 bp)
GAAATACGGGCCATACGGCGGCAAC
LOC_Os04g03360
OsAffx.13641.1.S1_at--680--5171Chr04:1431905..1431929 (25 bp)
GCAAGCAAGGGACTCCATTCTCCAT
LOC_Os04g03360
OsAffx.13641.1.S1_at--721--9471Chr04:1431923..1431947 (25 bp)
TCTCCATCCCGGTTGGAAAGGGTTG
LOC_Os04g03360
OsAffx.13641.1.S1_at--63--5811Chr04:1431968..1431992 (25 bp)
GACGCTGTGGATGGCTCCTCGATGC
LOC_Os04g03360
Target Sequence 
CGACTACTACATCCAACAACAGCAGCAACATGGAGGACGTGATCGCCATGGTGGTGGACAGCTCAAGCTCATGAACCATG
GTCCATGGGGCCAAGCGTCTTCCTACAATTCCATAGCCGTCCGTGATGAGATCAAGTTGTCGGCGCGTGAACAGGTGACA
GCGGTGGAGGGCACGGTTGGGAATTTCAGGGACGTGGATGAGCCGGTGATTACCTCCCTCACCTTCTACACCAACGCCGG
CAGGAAATACGGGCCATACGGCGGCAACGGCAAGCAAGGGACTCCATTCTCCATCCCGGTTGGAAAGGGTTGCATCGTCG
TTGGATTCTGGGGACGCTGTGGATGGCTCCTCGATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13641.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis