Browse Element(s) Details


OsAffx.13672.1.S1_at

Description tigr:9632.m00389
TID=OsAffx.13672.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0479010/11hypothetical protein
LOC_Os04g035791/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g04720NANA4+2254019..2259642retrotransposon protein, putative, unclassified
LOC_Os04g04730NANA4+2260562..2263176retrotransposon protein, putative, unclassified
LOC_Os04g04740OsAffx.3722.1.S1_at11/114+2266333..2266704hypothetical protein
LOC_Os04g04740OsAffx.3722.1.S1_x_at11/114+2266333..2266704hypothetical protein
LOC_Os04g04750OsAffx.13669.1.S1_at11/114+2269017..2272134Peroxidase family protein, expressed
LOC_Os04g04760OsAffx.13670.1.S1_at11/114+2275067..2276084hypothetical protein
LOC_Os04g04770OsAffx.13668.1.S1_x_at1/114+2279193..2280068Legume lectins beta domain containing protein
LOC_Os04g04780OsAffx.13671.1.S1_x_at11/114+2281349..2281638expressed protein
LOC_Os04g04790OsAffx.13672.1.S1_at10/114+2282838..2286662hypothetical protein
LOC_Os04g04800OsAffx.25862.2.S1_at9/114+2287918..2289845Protein kinase domain containing protein
LOC_Os04g04810NANA4+2302334..2303979retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g04820OsAffx.31869.1.S1_at11/114+2308261..2309376retrotransposon protein, putative, unclassified
LOC_Os04g04820OsAffx.31869.3.S1_s_at1/114+2308261..2309376retrotransposon protein, putative, unclassified
LOC_Os04g04820OsAffx.31869.5.S1_x_at1/114+2308261..2309376retrotransposon protein, putative, unclassified
LOC_Os04g04820OsAffx.31869.2.S1_at1/114+2308261..2309376retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13672.1.S1_at--657--3651Chr04:2283284..2283308 (25 bp)
CTTCTCGCCGTCACATGGTGGTGGT
LOC_Os04g04790
OsAffx.13672.1.S1_at--54--5811Chr04:2283324..2283348 (25 bp)
GACGCTGACTCTCCATCATGTTTGG
LOC_Os04g04790
OsAffx.13672.1.S1_at--874--7512Chr04:2284406..2284430 (25 bp)
GTGGACGAATATCTGGTTGGATACC
LOC_Os04g04790
OsAffx.13672.1.S1_at--731--6611Chr04:2284421..2284445 (25 bp)
GTTGGATACCATGGCACCCCAAGAT
LOC_Os04g04790
OsAffx.13672.1.S1_at--742--1791NONE
ACCCCAAGATGTGATAGACGCAATA
NONE
OsAffx.13672.1.S1_at--843--6131Chr04:2286464..2286488 (25 bp)
GAGGGAGTCCAACGAAGAGCACAAA
LOC_Os04g04790
OsAffx.13672.1.S1_at--705--1672Chr04:2286503..2286527 (25 bp)
AGCCGCATCCGCATATACTTTAGAG
LOC_Os04g04790
OsAffx.13672.1.S1_at--440--9452Chr04:2286538..2286562 (25 bp)
TCGGCTATTTATACAGGTGCAGACT
LOC_Os04g04790
OsAffx.13672.1.S1_at--795--7772Chr04:2286553..2286577 (25 bp)
GGTGCAGACTCAACTGCCCGTGGAG
LOC_Os04g04790
OsAffx.13672.1.S1_at--984--4531Chr04:2286568..2286592 (25 bp)
GCCCGTGGAGGGACCTCACACTGGT
LOC_Os04g04790
OsAffx.13672.1.S1_at--1026--3333Chr12:26904387..26904524 (25 bp)
CACTGGTGGAGAAATTATCGATCTT
NONE
Target Sequence 
CTTCTCGCCGTCACATGGTGGTGGTGGTGCTGATTCCCCGGACGCTGACTCTCCATCATGTTTGGATAGAGGGGAGGGGA
GATGGGGAGAGAGGAGGAAGAAGAAGAGGAGTGGGAATGACATGTGGGGCACATGTCAGAGAAGGGTGGACGAATATCTG
GTTGGATACCATGGCACCCCAAGATGTGATAGACGCAATAAGGCACTGCTTTTTGGAGGACTGATCATGGGAGGAGCTGT
TGCATTGGCGTTAGTGCTGTGGTTCTTGATCTCTTGTTTGATGCAGAAGAGGCTCGGAGAGGGGGCCTTTGGGGTAGTGT
ACAGCGGATTCCTGAAGCGGTTGGAGCGTGAAGTTGCTGTGAAGAAAATAGTGAGGGAGTCCAACGAAGAGCACAAAGAC
TTCTTCGCCGAAGCCGCATCCGCATATACTTTAGAGCCTATGAAAATCGGCTATTTATACAGGTGCAGACTCAACTGCCC
GTGGAGGGACCTCACACTGGTGGAGAAATTATCGATCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13672.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis