Browse Element(s) Details


OsAffx.15504.1.S1_at

Description tigr:9634.m01933
TID=OsAffx.15504.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1994010/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g19910OsAffx.15503.1.S1_x_at10/116+11390392..11391975hypothetical protein
LOC_Os06g19910OsAffx.15503.1.S1_at9/116+11390392..11391975hypothetical protein
LOC_Os06g19910OsAffx.30326.1.S1_x_at3/116+11390392..11391975hypothetical protein
LOC_Os06g19920OsAffx.7163.1.S1_at1/116+11392976..11397608retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g19920OsAffx.22167.1.S1_x_at1/116+11392976..11397608retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g19920OsAffx.22167.1.S1_at1/116+11392976..11397608retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g19930Os.17297.1.S1_at1/116+11411055..11415473retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g19940OsAffx.15504.1.S1_at10/116+11415740..11421385retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g19940OsAffx.20733.1.A1_x_at4/116+11415740..11421385retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g19940Os.45173.1.S1_x_at3/116+11415740..11421385retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g19940OsAffx.20691.1.A1_x_at2/116+11415740..11421385retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g19950NANA6+11422611..11423936Transposable element protein, putative, MuDR
LOC_Os06g19960OsAffx.15506.1.S1_at11/116+11438153..11446644Aconitase family containing protein
LOC_Os06g19960Os.20476.2.S1_a_at1/116+11438153..11446644Aconitase family containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15504.1.S1_at--660--7231Chr06:11421328..11421352 (25 bp)
GTCGCTGTCGGATCTGTCGTCCCCA
LOC_Os06g19940
OsAffx.15504.1.S1_at--307--6131Chr06:11421265..11421289 (25 bp)
GAGGGCCCCTATGCTGGATCCGCGT
LOC_Os06g19940
OsAffx.15504.1.S1_at--415--3911Chr06:11421252..11421276 (25 bp)
CTGGATCCGCGTGGGACAGGCTACT
LOC_Os06g19940
OsAffx.15504.1.S1_at--428--1951Chr06:11421230..11421254 (25 bp)
ACTGGCGCCGGTTCCAAGCCAAGGA
LOC_Os06g19940
OsAffx.15504.1.S1_at--74--6691Chr06:11421220..11421244 (25 bp)
GTTCCAAGCCAAGGAAGCCTGCCGT
LOC_Os06g19940
OsAffx.15504.1.S1_at--377--951Chr06:11421209..11421233 (25 bp)
AGGAAGCCTGCCGTCAGCCAATGTG
LOC_Os06g19940
OsAffx.15504.1.S1_at--1051--4491Chr06:11421200..11421224 (25 bp)
GCCGTCAGCCAATGTGCCCGAGGAA
LOC_Os06g19940
OsAffx.15504.1.S1_at--390--7111Chr06:11421197..11421221 (25 bp)
GTCAGCCAATGTGCCCGAGGAAGCC
LOC_Os06g19940
OsAffx.15504.1.S1_at--835--1731Chr06:11421171..11421195 (25 bp)
ACCATCAGCTGCACCCGAGGAAGCC
LOC_Os06g19940
OsAffx.15504.1.S1_at--274--8151Chr06:11421034..11421177 (25 bp)
GGAAGCCCACCGTACCCATTGGTAG
LOC_Os06g19940
OsAffx.15504.1.S1_at--581--3191NONE
CACCGTACCCATTGGTAGTGGTGCC
NONE
Target Sequence 
GTCGCTGTCGGATCTGTCGTCCCCACTGCCCTCTGTCATCGTCGGCATCACATCCCCGCGAGGGAGGGCCCCTATGCTGG
ATCCGCGTGGGACAGGCTACTGGCGCCGGTTCCAAGCCAAGGAAGCCTGCCGTCAGCCAATGTGCCCGAGGAAGCCCACC
ATCAGCTGCACCCGAGGAAGCCCACCGTACCCATTGGTAGTGGTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15504.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis