Browse Element(s) Details


Os.52031.1.S1_at

Description gb:AK064573.1
DB_XREF= gi:32974591
TID=Os.52031.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52031 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-112-E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-112-E01, full insert sequence.
FL= gb:AK064573.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2336011/11Signal recognition particle 68 kDa protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g23320Os.50001.1.S1_at11/118+13946091..139496224-hydroxybenzoate polyprenyl transferase family protein, expressed
LOC_Os08g23330OsAffx.32056.1.S1_x_at11/118+13952775..13957712transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g23330OsAffx.32056.1.S1_at11/118+13952775..13957712transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g23330OsAffx.30536.1.S1_x_at1/118+13952775..13957712transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g23340OsAffx.10637.3.S1_s_at11/118+13959227..13962913transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g23340OsAffx.10637.1.S1_s_at11/118+13959227..13962913transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g23340OsAffx.10637.4.S1_s_at8/118+13959227..13962913transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g23350NANA8+13967475..13967855hypothetical protein
LOC_Os08g23360Os.52031.1.S1_at11/118+13972972..13984908Signal recognition particle 68 kDa protein, putative, expressed
LOC_Os08g23360Os.8747.3.S1_x_at1/118+13972972..13984908Signal recognition particle 68 kDa protein, putative, expressed
LOC_Os08g23370OsAffx.10020.1.S1_x_at1/118+13996193..13996602hypothetical protein
LOC_Os08g23380OsAffx.29315.1.S1_at4/118+13999436..14002862retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g23380OsAffx.3810.1.S1_at3/118+13999436..14002862retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g23390Os.23638.1.A1_x_at1/118+14008162..14009966retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52031.1.S1_at--1134--5951Chr08:13974643..13974667 (25 bp)
GAGAATGTTCCTGAAAGACTTTCGA
LOC_Os08g23360
Os.52031.1.S1_at--202--7451Chr08:13974615..13974639 (25 bp)
GTGTCTCAACATTGTCACTTGGTGA
LOC_Os08g23360
Os.52031.1.S1_at--846--3811Chr08:13973367..13973391 (25 bp)
CTCCATTCCAATCAGTTCCGTGTAA
LOC_Os08g23360
Os.52031.1.S1_at--1003--6691Chr08:13973353..13973377 (25 bp)
GTTCCGTGTAATCCTATTGTTCTTG
LOC_Os08g23360
Os.52031.1.S1_at--539--571Chr08:13973343..13973367 (25 bp)
ATCCTATTGTTCTTGATATGGCCTA
LOC_Os08g23360
Os.52031.1.S1_at--172--271Chr08:13973328..13973352 (25 bp)
ATATGGCCTACAATGCGATCGAGTT
LOC_Os08g23360
Os.52031.1.S1_at--535--6711Chr08:13973222..13973246 (25 bp)
GTTCGACAGGATTATCTTCCTCTTG
LOC_Os08g23360
Os.52031.1.S1_at--1126--8992Chr12:764013..764125 (25 bp)
TGAATTGGTCTTTTCTTTTGCCATG
NONE
Os.52031.1.S1_at--924--3491Chr08:13973138..13973162 (25 bp)
CATGGCACTCTCGATTGGTGGAATG
LOC_Os08g23360
Os.52031.1.S1_at--763--8191Chr08:13973119..13973143 (25 bp)
GGAATGGTTTTGTTGGGCATCCCTT
LOC_Os08g23360
Os.52031.1.S1_at--150--551Chr08:13973101..13973125 (25 bp)
ATCCCTTTCCCCTTAAGAATGTCAT
LOC_Os08g23360
Target Sequence 
GAGAATGTTCCTGAAAGACTTTCGAAAGGTGTCTCAACATTGTCACTTGGTGAACGAAAGGNNNCTTTCCTTCTTGATAT
GCTAGAAAGCTATGAATCAGCACTCGGTGAATCAAATACCAAAACNCCATGTCGCATTGCNCGATTCCCACCTCCATTCC
AATCAGTTCCGTGTAATCCTATTGTTCTTGATATGGCCTACAATGCGATCGAGTTCCCAANCATTGAGANCAGAATGAAG
AAGGAGAAGAAGGGTCTTCTCAGCAGATTNTGGGGCTGAAAANAAGGGAGGGCGTAGTTCGACAGGATTATCTTCCTCTT
GGATTTTGATACATTAGTTTGGTGGTTTGAATTGGTCTTTTCTTTTGCCATGAACTGGAACATGGCACTCTCGATTGGTG
GAATGGTTTTGTTGGGCATCCCTTTCCCCTTAAGAATGTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52031.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis