Browse Element(s) Details


Os.54215.1.S1_x_at

Description gb:AK102570.1
DB_XREF= gi:32987779
TID=Os.54215.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54215 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) mRNA for RNA helicase, partial cds, clone: pNS-FP40
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033097L21, full insert sequence.
FL= gb:AK102570.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2058010/11ATP-dependent RNA helicase DBP3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g20544OsAffx.5386.1.S1_at11/117+11863847..11872542aspartate kinase family protein, expressed
LOC_Os07g20544Os.49205.1.S1_at11/117+11863847..11872542aspartate kinase family protein, expressed
LOC_Os07g20560NANA7+11876946..11881654retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g20570OsAffx.5387.1.S1_at9/117+11883225..11884009hypothetical protein
LOC_Os07g20580Os.54215.1.S1_x_at10/117+11885483..11892727ATP-dependent RNA helicase DBP3, putative, expressed
LOC_Os07g20580OsAffx.31822.1.S1_at1/117+11885483..11892727ATP-dependent RNA helicase DBP3, putative, expressed
LOC_Os07g20590OsAffx.16347.1.S1_at11/117+11901758..11902253hypothetical protein
LOC_Os07g20600OsAffx.5388.1.S1_at11/117+11907024..11907524expressed protein
LOC_Os07g20610OsAffx.28531.1.S1_at11/117+11908142..11911997Protein kinase domain containing protein
LOC_Os07g20620NANA7+11915391..11919047retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0004004molecular_functionATP-dependent RNA helicase activity
GO:0008026molecular_functionATP-dependent helicase activity
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54215.1.S1_x_at--907--4971Chr07:11886493..11886517 (25 bp)
GCATCCCGTGGACTTGATATTCCAG
LOC_Os07g20580
Os.54215.1.S1_x_at--225--2531Chr07:11886451..11886475 (25 bp)
AACTATAGCTATCCTTTGACTACAG
LOC_Os07g20580
Os.54215.1.S1_x_at--20--1031Chr07:11886380..11886404 (25 bp)
AGGTGTTGCACATACCTTCTTCACT
LOC_Os07g20580
Os.54215.1.S1_x_at--673--1071Chr07:11886257..11886281 (25 bp)
AGGGACTTGCTGGTGAACTTGTCAA
LOC_Os07g20580
Os.54215.1.S1_x_at--800--6691Chr07:11886207..11886231 (25 bp)
GTTCCTCCTGCACTTACAAAATTTG
LOC_Os07g20580
Os.54215.1.S1_x_at--528--5151Chr07:11885759..11885783 (25 bp)
GCAACATTTGCTGGTCTTTTCTTCG
LOC_Os07g20580
Os.54215.1.S1_x_at--922--7811Chr07:11885747..11885771 (25 bp)
GGTCTTTTCTTCGTTGCGTTCTGAA
LOC_Os07g20580
Os.54215.1.S1_x_at--160--5971Chr07:11885664..11885688 (25 bp)
GAGAACCCCTCTAACAGTATCATTG
LOC_Os07g20580
Os.54215.1.S1_x_at--15--10171Chr07:11885620..11885644 (25 bp)
TATCAGTGATTTCCTACCTTGTCCA
LOC_Os07g20580
Os.54215.1.S1_x_at--343--5191Chr07:11885562..11885586 (25 bp)
GCAATTTGCTTCTCTTGTGTTGGAA
LOC_Os07g20580
Os.54215.1.S1_x_at--90--8691NONE
TGTGCTAAGGCACCATTGGCAGTCC
NONE
Target Sequence 
GCATCCCGTGGACTTGATATTCCAGATGTCGAAGTTGTCATTAACTATAGCTATCCTTTGACTACAGAGGATTATGTCCA
CAGGATTGGGAGGACCGGTCGTGCTGGCAAGAAAGGTGTTGCACATACCTTCTTCACTCAAGAGAACAAGGGACTTGCTG
GTGAACTTGTCAATGTTTTGCGGGAGGCTGGTCAGGTCGTTCCTCCTGCACTTACAAAATTTGGCACACACGTCAAGAAA
AAGGAATCGCAAATATATGGATCTCATTTCAAAGAAATCAAAGCAGATGCTCCTAAATCAACAAAGATTACGTTTGGTGA
TTCTGATGAGGACTAGCAACATTTGCTGGTCTTTTCTTCGTTGCGTTCTGAAGTTTTGATGCTTGGAGTAGGCCAAATAT
TCGACAGCAAAATATTGCCTTTCTTGAAGGGAGAACCCCTCTAACAGTATCATTGTATACCTAGGTTAGTTTAGTATCAG
TGATTTCCTACCTTGTCCAGACCATCTTATTTTATACTTGGTTGTATGTACTGCAATTTGCTTCTCTTGTGTTGGAAAAA
ACAGTAAAATCAGATATGTGCTAAGGCACCATTGGCAGTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54215.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis