Browse Element(s) Details


OsAffx.28531.1.S1_at

Description tigr:9635.m02031
TID=OsAffx.28531.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2061011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g20570OsAffx.5387.1.S1_at9/117+11883225..11884009hypothetical protein
LOC_Os07g20580Os.54215.1.S1_x_at10/117+11885483..11892727ATP-dependent RNA helicase DBP3, putative, expressed
LOC_Os07g20580OsAffx.31822.1.S1_at1/117+11885483..11892727ATP-dependent RNA helicase DBP3, putative, expressed
LOC_Os07g20590OsAffx.16347.1.S1_at11/117+11901758..11902253hypothetical protein
LOC_Os07g20600OsAffx.5388.1.S1_at11/117+11907024..11907524expressed protein
LOC_Os07g20610OsAffx.28531.1.S1_at11/117+11908142..11911997Protein kinase domain containing protein
LOC_Os07g20620NANA7+11915391..11919047retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g20630OsAffx.25367.1.S1_at1/117+11920431..11925106retrotransposon, putative, centromere-specific
LOC_Os07g20640NANA7+11925564..11925805hypothetical protein
LOC_Os07g20650NANA7+11930088..11930342hypothetical protein
LOC_Os07g20660NANA7+11931989..11934989hypothetical protein
LOC_Os07g20670OsAffx.16451.1.A1_x_at1/117+11935519..11947142retrotransposon protein, putative, unclassified
LOC_Os07g20670OsAffx.25210.1.S1_x_at1/117+11935519..11947142retrotransposon protein, putative, unclassified
LOC_Os07g20670OsAffx.22699.1.S1_x_at1/117+11935519..11947142retrotransposon protein, putative, unclassified
LOC_Os07g20670Os.53895.1.S1_at1/117+11935519..11947142retrotransposon protein, putative, unclassified
LOC_Os07g20670Os.45161.1.A1_x_at1/117+11935519..11947142retrotransposon protein, putative, unclassified
LOC_Os07g20670OsAffx.25367.1.S1_at1/117+11935519..11947142retrotransposon protein, putative, unclassified
LOC_Os07g20670OsAffx.20929.1.S1_at1/117+11935519..11947142retrotransposon protein, putative, unclassified
LOC_Os07g20670OsAffx.25210.1.S1_at1/117+11935519..11947142retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0005529molecular_functionsugar binding
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28531.1.S1_at--30--7491Chr07:11910702..11910726 (25 bp)
GTGGGCTGCAATACCTTCACAAGGA
LOC_Os07g20610
OsAffx.28531.1.S1_at--361--2231Chr07:11910684..11910708 (25 bp)
ACAAGGACTCAAGGCACACCATCAT
LOC_Os07g20610
OsAffx.28531.1.S1_at--239--7931Chr07:11910618..11910642 (25 bp)
GGATTGCAAGGCTTTTCAGCCACAA
LOC_Os07g20610
OsAffx.28531.1.S1_at--219--8631Chr07:11910593..11910617 (25 bp)
TGGTGGCAATCAGGACTGCACGATC
LOC_Os07g20610
OsAffx.28531.1.S1_at--75--3851Chr07:11910578..11910602 (25 bp)
CTGCACGATCACTGACAGGGTTGTT
LOC_Os07g20610
OsAffx.28531.1.S1_at--737--411Chr07:11910286..11910310 (25 bp)
AGTTTCGGCGTTCTACTACTGGAGA
LOC_Os07g20610
OsAffx.28531.1.S1_at--622--8171Chr07:11910239..11910262 (24 bp)
GGAACTTCGAGCCTTATAGCACATA
LOC_Os07g20610
OsAffx.28531.1.S1_at--587--8191Chr07:11908388..11908412 (25 bp)
GGAAGACGGCAGGAACCTCGAGCTC
LOC_Os07g20610
OsAffx.28531.1.S1_at--682--4711Chr07:11908325..11908349 (25 bp)
GCTGGAGCAGGCAACGACGTGCATT
LOC_Os07g20610
OsAffx.28531.1.S1_at--1136--8831Chr07:11908242..11908266 (25 bp)
TGATCCACATGCTGTCGCGGGAGAA
LOC_Os07g20610
OsAffx.28531.1.S1_at--218--7351Chr07:11908187..11908211 (25 bp)
GTGCACACCGATGAGACGATCGCCA
LOC_Os07g20610
Target Sequence 
GTGGGCTGCAATACCTTCACAAGGACTCAAGGCACACCATCATCCACCGAGATCTTAAGGTGGTGGCTAAGATATCGGAT
TTTGGGATTGCAAGGCTTTTCAGCCACAATGGTGGCAATCAGGACTGCACGATCACTGACAGGGTTGTTGGAACACCTGG
ATACATGTCACCAGAGTATGCAATGGATGGTAAGTTGTCATTCATGCAAGACGTGTATAGTTTCGGCGTTCTACTACTGG
AGATCATCAGTGGCAAGCACAACCAAGGAACTTCGAGCCTTATAGCACATACATGGAGGCTATGGGAAGACGGCAGGAAC
CTCGAGCTCCTGGACCCCGCCGTGCGTGGCGAGTGCACCGCCAGCGAGCTGGAGCAGGCAACGACGTGCATTCAGGTCGG
GCTGCTGTGCGTCCAGGAGAGCCCGGACCAGCGGCCGCCGATGGCCGACGTGATCCACATGCTGTCGCGGGAGAAGGCGC
TGGGCCAGCCGCGGCGGCCGGTGGTGTGCACACCGATGAGACGATCGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28531.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis