Browse Element(s) Details


OsAffx.28530.1.S1_at

Description tigr:9635.m02023
TID=OsAffx.28530.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2053010/11hypothetical protein
LOC_Os11g099191/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g20500NANA7+11834913..11836922retrotransposon protein, putative, unclassified
LOC_Os07g20510Os.50323.1.S1_at11/117+11844167..11849942Auxin Efflux Carrier family protein
LOC_Os07g20510Os.13580.1.A1_at9/117+11844167..11849942Auxin Efflux Carrier family protein
LOC_Os07g20510Os.49579.1.S1_at1/117+11844167..11849942Auxin Efflux Carrier family protein
LOC_Os07g20520OsAffx.5385.1.S1_at10/117+11856020..11857097hypothetical protein
LOC_Os07g20530OsAffx.28530.1.S1_at10/117+11858096..11859486hypothetical protein
LOC_Os07g20530Os.31535.1.A1_at1/117+11858096..11859486hypothetical protein
LOC_Os07g20544OsAffx.5386.1.S1_at11/117+11863847..11872542aspartate kinase family protein, expressed
LOC_Os07g20544Os.49205.1.S1_at11/117+11863847..11872542aspartate kinase family protein, expressed
LOC_Os07g20560NANA7+11876946..11881654retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g20570OsAffx.5387.1.S1_at9/117+11883225..11884009hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28530.1.S1_at--430--2031Chr07:11858152..11858176 (25 bp)
ACTTCCGAACCTTGTGAGTTGTCCG
LOC_Os07g20530
OsAffx.28530.1.S1_at--473--9291Chr07:11858155..11858179 (25 bp)
TCCGAACCTTGTGAGTTGTCCGAAA
LOC_Os07g20530
OsAffx.28530.1.S1_at--605--4311Chr07:11858161..11858185 (25 bp)
CCTTGTGAGTTGTCCGAAAGTTCCG
LOC_Os07g20530
OsAffx.28530.1.S1_at--882--6611Chr07:11858169..11858193 (25 bp)
GTTGTCCGAAAGTTCCGGGTGTCAG
LOC_Os07g20530
OsAffx.28530.1.S1_at--508--3452Chr12:17501856..17501880 (25 bp)
CAGGAAGTTCCGGACTCCTTCCAGT
NONE
OsAffx.28530.1.S1_at--80--4214Chr08:22928479..22928502 (24 bp)
CCCGCGAGCTTCCAAAGATCTTGTA
NONE
OsAffx.28530.1.S1_at--576--4911Chr07:11858536..11858560 (25 bp)
GCTTCCAAAGATCTTGTAGATGTCC
LOC_Os07g20530
OsAffx.28530.1.S1_at--266--3811NONE
CTCCGCAAGGAAACGAGGTGTTGGT
NONE
OsAffx.28530.1.S1_at--116--2391Chr07:11859423..11859442 (20 bp)
AAACGAGGTGTTGGTCTTGCCTCCA
LOC_Os07g20530
OsAffx.28530.1.S1_at--1135--8811Chr07:11859426..11859450 (25 bp)
TGTTGGTCTTGCCTCCAATACAGAT
LOC_Os07g20530
OsAffx.28530.1.S1_at--1042--9571Chr07:11859432..11859456 (25 bp)
TCTTGCCTCCAATACAGATCTCTTT
LOC_Os07g20530
Target Sequence 
ACTTCCGAACCTTGTGAGTTGTCCGAAAGTTCCGGGTGTCAGGAAGTTCCGGACTCCTTCCAGTTCAAAAATGTGTCGCC
CGCGAGCTTCCAAAGATCTTGTAGATGTCCTGGGAAGATTTGTGAAGGTTTTCCTCACCTCCGCAAGGAAACGAGGTGTT
GGTCTTGCCTCCAATACAGATCTCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28530.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis