Browse Element(s) Details


OsAffx.5385.1.S1_at

Description tigr:9635.m02022
TID=OsAffx.5385.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2052010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g20490NANA7+11829242..11832188retrotransposon protein, putative, unclassified
LOC_Os07g20500NANA7+11834913..11836922retrotransposon protein, putative, unclassified
LOC_Os07g20510Os.50323.1.S1_at11/117+11844167..11849942Auxin Efflux Carrier family protein
LOC_Os07g20510Os.13580.1.A1_at9/117+11844167..11849942Auxin Efflux Carrier family protein
LOC_Os07g20510Os.49579.1.S1_at1/117+11844167..11849942Auxin Efflux Carrier family protein
LOC_Os07g20520OsAffx.5385.1.S1_at10/117+11856020..11857097hypothetical protein
LOC_Os07g20530OsAffx.28530.1.S1_at10/117+11858096..11859486hypothetical protein
LOC_Os07g20530Os.31535.1.A1_at1/117+11858096..11859486hypothetical protein
LOC_Os07g20544OsAffx.5386.1.S1_at11/117+11863847..11872542aspartate kinase family protein, expressed
LOC_Os07g20544Os.49205.1.S1_at11/117+11863847..11872542aspartate kinase family protein, expressed
LOC_Os07g20560NANA7+11876946..11881654retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5385.1.S1_at--606--8851Chr07:11856274..11856298 (25 bp)
TGATCCAGAGGATCTGACGACGCCT
LOC_Os07g20520
OsAffx.5385.1.S1_at--461--5811Chr07:11856292..11856316 (25 bp)
GACGCCTCATCTCTTTGATTTGGAA
LOC_Os07g20520
OsAffx.5385.1.S1_at--449--10411Chr07:11856320..11856344 (25 bp)
TTATTGATGCACAGGACTAGCTTCA
LOC_Os07g20520
OsAffx.5385.1.S1_at--509--2311Chr07:11856353..11856377 (25 bp)
AAAGGAACTCCTTTTGGTTGCATGG
LOC_Os07g20520
OsAffx.5385.1.S1_at--298--7911Chr07:11856368..11856391 (24 bp)
GGTTGCATGGGTACCACTCGAGGTT
LOC_Os07g20520
OsAffx.5385.1.S1_at--845--1991NONE
ACTCGAGGTTTAGCTTCAGCCGCTC
NONE
OsAffx.5385.1.S1_at--1068--5291Chr07:11856791..11856815 (25 bp)
GAAGGCACTTCAAGCTATCTTTTGT
LOC_Os07g20520
OsAffx.5385.1.S1_at--168--1571Chr07:11856803..11856827 (25 bp)
AGCTATCTTTTGTATGGGCACCAAG
LOC_Os07g20520
OsAffx.5385.1.S1_at--396--7991Chr07:11856911..11856935 (25 bp)
GGATGAAGCTTTTGAGGACCCATTT
LOC_Os07g20520
OsAffx.5385.1.S1_at--684--10771Chr07:11856922..11856946 (25 bp)
TTGAGGACCCATTTGCTGCATATGA
LOC_Os07g20520
OsAffx.5385.1.S1_at--1072--9451Chr07:11856991..11857015 (25 bp)
TCTGTGAGAACTCCACGTCTAGTGA
LOC_Os07g20520
Target Sequence 
TGATCCAGAGGATCTGACGACGCCTCATCTCTTTGATTTGGAAGCCTTATTGATGCACAGGACTAGCTTCATGTATGAGA
AAGGAACTCCTTTTGGTTGCATGGGTACCACTCGAGGTTTAGCTTCAGCCGCTCCTTCAGTTGCTCCTCAGCGCTCGAGC
TCTTCTTCTACCATCAAGAAGGCACTTCAAGCTATCTTTTGTATGGGCACCAAGATAGCAAAGAAAGTCAAGAAGATTGA
GAGGCATCAGAAGGAAGATTGGAAGGCTGCAGGCAAGGATGTGTCAGATGTTTCTGAGGATGAAGCTTTTGAGGACCCAT
TTGCTGCATATGAGGCTGCTAGGGATGTGGCTGCCGGTGAGGGTCCCTCTCACTCCTTCTGTGAGAACTCCACGTCTAGT
GA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5385.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis