Browse Element(s) Details


Os.53582.1.S1_at

Description gb:AK073402.1
DB_XREF= gi:32983425
TID=Os.53582.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53582 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033041F22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033041F22, full insert sequence.
FL= gb:AK073402.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3831011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g38239Os.15407.1.S1_at11/119+22013268..22014768Sulfotransferase domain containing protein, expressed
LOC_Os09g38239OsAffx.30188.1.S1_s_at11/119+22013268..22014768Sulfotransferase domain containing protein, expressed
LOC_Os09g38268OsAffx.26522.2.S1_at11/119+22018137..22032258RNA polymerase Rpb1, domain 2 family protein, expressed
LOC_Os09g38268Os.54279.1.S1_at11/119+22018137..22032258RNA polymerase Rpb1, domain 2 family protein, expressed
LOC_Os09g38300OsAffx.6517.1.S1_at11/119+22034063..22035817Kelch motif family protein
LOC_Os09g38310Os.53582.1.S1_at11/119+22036478..22040192pentatricopeptide, putative, expressed
LOC_Os09g38320Os.22278.1.S1_at11/119+22041490..22044567Phytoene synthase, chloroplast precursor, putative, expressed
LOC_Os09g38330Os.53985.1.S1_at11/119+22047983..22056548expressed protein
LOC_Os09g38340Os.19512.3.S1_x_at11/119+22063973..22070268Zinc finger, C2H2 type family protein, expressed
LOC_Os09g38340Os.19512.2.S1_x_at11/119+22063973..22070268Zinc finger, C2H2 type family protein, expressed
LOC_Os09g38340Os.19512.2.S1_at11/119+22063973..22070268Zinc finger, C2H2 type family protein, expressed
LOC_Os09g38340Os.21255.1.S1_x_at1/119+22063973..22070268Zinc finger, C2H2 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53582.1.S1_at--792--6331Chr09:22037378..22037402 (25 bp)
GATGCTTGTCACATCTCACATGGAT
LOC_Os09g38310
Os.53582.1.S1_at--1004--8551Chr09:22037347..22037371 (25 bp)
TGGTACATCAGTTAACCGGGTCCCT
LOC_Os09g38310
Os.53582.1.S1_at--1142--9671Chr09:22037322..22037346 (25 bp)
TCACTTCACAGCTTGCCGGTTTGAA
LOC_Os09g38310
Os.53582.1.S1_at--740--2431Chr09:22037290..22037314 (25 bp)
AAAAGAGTGCCCCATGTGTTGTGCT
LOC_Os09g38310
Os.53582.1.S1_at--980--6751Chr09:22037259..22037283 (25 bp)
GTTAAGCGCCGAGTCGACATGAGTT
LOC_Os09g38310
Os.53582.1.S1_at--340--5671Chr09:22037244..22037268 (25 bp)
GACATGAGTTGCCACTGGAGCCACA
LOC_Os09g38310
Os.53582.1.S1_at--1121--3292Chr01:36240759..36240781 (22 bp)
CACACCGCCGCATTATTATTGGTTA
NONE
Os.53582.1.S1_at--899--10231Chr09:22037207..22037231 (25 bp)
TATTGGTTATTGACCTCCACTGTGC
LOC_Os09g38310
Os.53582.1.S1_at--9--9651Chr09:22037182..22037206 (25 bp)
TCAGTGTCCACGTCAAGCCAGCAGA
LOC_Os09g38310
Os.53582.1.S1_at--858--5031Chr09:22037162..22037186 (25 bp)
GCAGATCTTGGTTTCACAGGCATGT
LOC_Os09g38310
Os.53582.1.S1_at--423--5651Chr09:22036660..22036684 (25 bp)
GACAGATCTATACTGCCGTACACTT
LOC_Os09g38310
Target Sequence 
GATGCTTGTCACATCTCACATGGATTCCTACTGGTACATCAGTTAACCGGGTCCCTTCACTTCACAGCTTGCCGGTTTGA
AGTGCAATAAAAGAGTGCCCCATGTGTTGTGCTTCGGCAGTTAAGCGCCGAGTCGACATGAGTTGCCACTGGAGCCACAC
CGCCGCATTATTATTGGTTATTGACCTCCACTGTGCTCAGTGTCCACGTCAAGCCAGCAGATCTTGGTTTCACAGGCATG
TGGAGATAAACAAAGGGAGCAGCCAGCACCAACCAGAATGATCAAGATTCCGTTTTATTAATTTTCAAGTTTCATGGACA
AACTACTACAGTGGTTCAGAGATATAAAAAGAACAAAACAGGCAGACAGATCTATACTGCCGTACACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53582.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis