Browse Element(s) Details


OsAffx.30189.1.S1_at

Description tigr:9637.m03273
TID=OsAffx.30189.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=signal peptidase protein-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3837011/11Signal peptidase subunit family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g38340Os.19512.3.S1_x_at11/119+22063973..22070268Zinc finger, C2H2 type family protein, expressed
LOC_Os09g38340Os.19512.2.S1_x_at11/119+22063973..22070268Zinc finger, C2H2 type family protein, expressed
LOC_Os09g38340Os.19512.2.S1_at11/119+22063973..22070268Zinc finger, C2H2 type family protein, expressed
LOC_Os09g38340Os.21255.1.S1_x_at1/119+22063973..22070268Zinc finger, C2H2 type family protein, expressed
LOC_Os09g38350OsAffx.18046.1.S1_at11/119+22082420..22084416AMP-binding enzyme family protein, expressed
LOC_Os09g38360OsAffx.6518.1.S1_at11/119+22089798..22090877hypothetical protein
LOC_Os09g38370OsAffx.30189.1.S1_at11/119+22091684..22094784Signal peptidase subunit family protein, expressed
LOC_Os09g38370OsAffx.30189.1.S1_s_at10/119+22091684..22094784Signal peptidase subunit family protein, expressed
LOC_Os09g38380OsAffx.30190.1.S1_at11/119+22095603..22096898Eukaryotic aspartyl protease family protein
LOC_Os09g38390NANA9+22098370..22100696PB1 domain containing protein, expressed
LOC_Os09g38400Os.54502.1.S1_at11/119+22104388..22106620expressed protein
LOC_Os09g38410Os.17501.1.A1_at5/119+22107282..22113256Major Facilitator Superfamily protein, expressed
LOC_Os09g38420Os.11564.1.S1_at11/119+22113719..22119480cysteinyl-tRNA synthetase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006465biological_processsignal peptide processing
GO:0009003molecular_functionsignal peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30189.1.S1_at--522--10711Chr09:22091975..22091999 (25 bp)
TTGCGGGGAGCAGACATTGCCTATG
LOC_Os09g38370
OsAffx.30189.1.S1_at--406--10811Chr09:22091904..22091928 (25 bp)
TTGTGTTCTAACTGAAACCAGGCGA
LOC_Os09g38370
OsAffx.30189.1.S1_at--552--6731Chr09:22091900..22091924 (25 bp)
GTTCTAACTGAAACCAGGCGATACA
LOC_Os09g38370
OsAffx.30189.1.S1_at--859--6931Chr09:22091829..22091853 (25 bp)
GTAGTGCCCTTTTGATCGAGAACCC
LOC_Os09g38370
OsAffx.30189.1.S1_at--820--1131Chr09:22091827..22091851 (25 bp)
AGTGCCCTTTTGATCGAGAACCCAG
LOC_Os09g38370
OsAffx.30189.1.S1_at--760--10391Chr09:22091820..22091844 (25 bp)
TTTTGATCGAGAACCCAGGCGTTGC
LOC_Os09g38370
OsAffx.30189.1.S1_at--498--5971Chr09:22091812..22091836 (25 bp)
GAGAACCCAGGCGTTGCAAACTTGC
LOC_Os09g38370
OsAffx.30189.1.S1_at--502--5131Chr09:22091797..22091821 (25 bp)
GCAAACTTGCAATCACGTTAATTTC
LOC_Os09g38370
OsAffx.30189.1.S1_at--655--5191Chr09:22091789..22091813 (25 bp)
GCAATCACGTTAATTTCAATGTTTA
LOC_Os09g38370
OsAffx.30189.1.S1_at--145--10511Chr09:22091775..22091799 (25 bp)
TTCAATGTTTATGTAGCAAATCCTA
LOC_Os09g38370
OsAffx.30189.1.S1_at--967--6811Chr09:22091769..22091793 (25 bp)
GTTTATGTAGCAAATCCTAGTATTT
LOC_Os09g38370
Target Sequence 
TTGCGGGGAGCAGACATTGCCTATGCTAAGTTTTTTGTTCTAATCGTAGCAAAACATGTAATCTTTTGTGCTTGTGTTCT
AACTGAAACCAGGCGATACATATGTTGTTTGACTCGTCATCCAGAAGTTGAGAAAGATGTAACAGTGTAGTGCCCTTTTG
ATCGAGAACCCAGGCGTTGCAAACTTGCAATCACGTTAATTTCAATGTTTATGTAGCAAATCCTAGTATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30189.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis