Browse Element(s) Details


Os.17501.1.A1_at

Description gb:AK059357.1
DB_XREF= gi:32969375
TID=Os.17501.1
CNT=7
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.17501 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-026-D07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-026-D07, full insert sequence.
FL= gb:AK059357.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g384105/11Major Facilitator Superfamily protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g38350OsAffx.18046.1.S1_at11/119+22082420..22084416AMP-binding enzyme family protein, expressed
LOC_Os09g38360OsAffx.6518.1.S1_at11/119+22089798..22090877hypothetical protein
LOC_Os09g38370OsAffx.30189.1.S1_at11/119+22091684..22094784Signal peptidase subunit family protein, expressed
LOC_Os09g38370OsAffx.30189.1.S1_s_at10/119+22091684..22094784Signal peptidase subunit family protein, expressed
LOC_Os09g38380OsAffx.30190.1.S1_at11/119+22095603..22096898Eukaryotic aspartyl protease family protein
LOC_Os09g38390NANA9+22098370..22100696PB1 domain containing protein, expressed
LOC_Os09g38400Os.54502.1.S1_at11/119+22104388..22106620expressed protein
LOC_Os09g38410Os.17501.1.A1_at5/119+22107282..22113256Major Facilitator Superfamily protein, expressed
LOC_Os09g38420Os.11564.1.S1_at11/119+22113719..22119480cysteinyl-tRNA synthetase family protein, expressed
LOC_Os09g38429NANA9+22120102..22120353hypothetical protein
LOC_Os09g38440Os.11478.1.S1_at11/119+22129970..22134245SET domain containing protein, expressed
LOC_Os09g38450Os.48054.1.S1_at11/119+22134382..22136559expressed protein
LOC_Os09g38460NANA9+22138056..22139114hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0008514molecular_functionorganic anion transporter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17501.1.A1_at--897--6971Chr09:22107524..22107548 (25 bp)
GTACCTGGAATAGTTGGCGTTGCAC
LOC_Os09g38410
Os.17501.1.A1_at--411--6671Chr09:22107506..22107530 (25 bp)
GTTGCACTAACAGGCTATCTTCTTG
LOC_Os09g38410
Os.17501.1.A1_at--1036--8031Chr09:22107376..22107490 (25 bp)
GGAGTATATCACTTTTCGCACCTTC
LOC_Os09g38410
Os.17501.1.A1_at--828--1911Chr09:22107335..22107359 (25 bp)
ACGGGTACTGCTGTCTGGCTAGCAT
LOC_Os09g38410
Os.17501.1.A1_at--214--211Chr09:22107312..22107336 (25 bp)
ATTTGCCAGCAGTGAGCCTCAGGAG
LOC_Os09g38410
Os.17501.1.A1_at--1084--5431Chr09:22107275..22107299 (25 bp)
GAACCGGAGTCGTCGTGAGTCATGA
NONE
Os.17501.1.A1_at--909--6271Chr09:22107189..22107213 (25 bp)
GATGTAGTTTCCCTGGCAAAGCGTT
NONE
Os.17501.1.A1_at--116--6971Chr09:22107084..22107108 (25 bp)
GTAGCGAGTGTCATTTCACGTTCTG
NONE
Os.17501.1.A1_at--580--8911Chr09:22107061..22107085 (25 bp)
TGACACGATTTCCTTTTCCATTACG
NONE
Os.17501.1.A1_at--641--4031Chr09:22107028..22107052 (25 bp)
CGTTGTTTTCTGCAGTAGTATCCCA
NONE
Os.17501.1.A1_at--807--131Chr09:22106931..22106955 (25 bp)
ATTACGACGTGATCCTTGACCATGT
NONE
Target Sequence 
GTACCTGGAATAGTTGGCGTTGCACTAACAGGCTATCTTCTTGATACAACTCATTCTTGGAGTATATCACTTTTCGCACC
TTCGATATTTTTTTACCTGACGGGTACTGCTGTCTGGCTAGCATTTGCCAGCAGTGAGCCTCAGGAGTTTTCGAAGTCAG
AACCGGAGTCGTCGTGAGTCATGACTTGGATGGCAAATAGTATATANCAGTTCCCANGAGGGGATCAGTTCAGGAAGAAT
TTTGTCAGATGTAGTTTCCCTGGCAAAGCGTTGGATTTTTGGACATTGGACAGGAGAATACAGCTCATTGGATATTGGCA
AATTTTTGGCCNATTTTAGTTTAGGCTTTTGTGTAGCGAGTGTCATTTCACGTTCTGACACGATTTCCTTTTCCATTACG
GGGAGTTGCGTTGTTTTCTGCAGTAGTATCCCAGGTAACGGTAGAAGAAGTAAATTTGTTGTATCATATGACATCTTTGG
GTATATGTGATGATTGATGGAGTTCATTACGACGTGATCCTTGACCATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17501.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis