Browse Element(s) Details


OsAffx.30190.1.S1_at

Description tigr:9637.m03274
TID=OsAffx.30190.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=chloroplast nucleoid DNA binding protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3838011/11Eukaryotic aspartyl protease family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g38350OsAffx.18046.1.S1_at11/119+22082420..22084416AMP-binding enzyme family protein, expressed
LOC_Os09g38360OsAffx.6518.1.S1_at11/119+22089798..22090877hypothetical protein
LOC_Os09g38370OsAffx.30189.1.S1_at11/119+22091684..22094784Signal peptidase subunit family protein, expressed
LOC_Os09g38370OsAffx.30189.1.S1_s_at10/119+22091684..22094784Signal peptidase subunit family protein, expressed
LOC_Os09g38380OsAffx.30190.1.S1_at11/119+22095603..22096898Eukaryotic aspartyl protease family protein
LOC_Os09g38390NANA9+22098370..22100696PB1 domain containing protein, expressed
LOC_Os09g38400Os.54502.1.S1_at11/119+22104388..22106620expressed protein
LOC_Os09g38410Os.17501.1.A1_at5/119+22107282..22113256Major Facilitator Superfamily protein, expressed
LOC_Os09g38420Os.11564.1.S1_at11/119+22113719..22119480cysteinyl-tRNA synthetase family protein, expressed
LOC_Os09g38429NANA9+22120102..22120353hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30190.1.S1_at--830--5891Chr09:22096166..22096190 (25 bp)
GAGCTGGCCACAAATGCAACCACCA
LOC_Os09g38380
OsAffx.30190.1.S1_at--78--5811Chr09:22096112..22096136 (25 bp)
GACCCCGTGCTGAAGTCCGGCTACT
LOC_Os09g38380
OsAffx.30190.1.S1_at--663--2851Chr09:22096100..22096124 (25 bp)
AAGTCCGGCTACTTCGTCAAGCTCG
LOC_Os09g38380
OsAffx.30190.1.S1_at--687--1591Chr09:22095925..22095949 (25 bp)
AGCTCGCGCCACTGAAGGAGGCCAA
LOC_Os09g38380
OsAffx.30190.1.S1_at--834--4511Chr09:22095828..22095852 (25 bp)
GCCGAACGTGACGATGACACTGCAC
LOC_Os09g38380
OsAffx.30190.1.S1_at--1031--3991Chr09:22095822..22095846 (25 bp)
CGTGACGATGACACTGCACTTCGAC
LOC_Os09g38380
OsAffx.30190.1.S1_at--593--5911Chr09:22095765..22095789 (25 bp)
GAGCTACCTGGCGAAGGACTCGGCG
LOC_Os09g38380
OsAffx.30190.1.S1_at--655--6651Chr09:22095735..22095759 (25 bp)
GTTGATCTGCCTGACGATGACGCCA
LOC_Os09g38380
OsAffx.30190.1.S1_at--922--9991Chr09:22095681..22095705 (25 bp)
TAGCTGGGCGCTGCTGGACACGCTC
LOC_Os09g38380
OsAffx.30190.1.S1_at--454--5831Chr09:22095647..22095671 (25 bp)
GACCTCGCCAAGAATGTCGTCTCGT
LOC_Os09g38380
OsAffx.30190.1.S1_at--738--2731Chr09:22095638..22095662 (25 bp)
AAGAATGTCGTCTCGTTCCAGCCGC
LOC_Os09g38380
Target Sequence 
GAGCTGGCCACAAATGCAACCACCACCCCTGCGGCGTCCACTCCCATGGTCGCCGACCCCGTGCTGAAGTCCGGCTACTT
CGTCAAGCTCGTCGGCGTGACGGTGGGCGCGACGCTGGTCGACGTCGCCGGCGCGTCGTCGGCGGAGGGCGGTGGCCGCG
CGCTCGTCATCGACAGCACGTCGCCCGTCACCGTCCTCGACGAGGCGACGTACGGGCCGGTGAGGCGGGCGCTGGTCGCC
CAGCTCGCGCCACTGAAGGAGGCCAACGCCAACGCCTCCGCGGGCGTCGGCCTCGACCTCTGCTTCGAGCTCGCGGCGGG
CGGCGCGACGCCGACGCCGCCGAACGTGACGATGACACTGCACTTCGACGGCGGCGCCGCCGACCTGGTGCTGCCCCCGG
CGAGCTACCTGGCGAAGGACTCGGCGGGCGGGTTGATCTGCCTGACGATGACGCCAAGCTCGTCGAACGGCGTCCCGGTG
CTGGGTAGCTGGGCGCTGCTGGACACGCTCGTGCTCTACGACCTCGCCAAGAATGTCGTCTCGTTCCAGCCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30190.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis