Browse Element(s) Details


OsAffx.18046.1.S1_at

Description tigr:9637.m03271
TID=OsAffx.18046.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AMP-binding enzyme, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3835011/11AMP-binding enzyme family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g38340Os.19512.3.S1_x_at11/119+22063973..22070268Zinc finger, C2H2 type family protein, expressed
LOC_Os09g38340Os.19512.2.S1_x_at11/119+22063973..22070268Zinc finger, C2H2 type family protein, expressed
LOC_Os09g38340Os.19512.2.S1_at11/119+22063973..22070268Zinc finger, C2H2 type family protein, expressed
LOC_Os09g38340Os.21255.1.S1_x_at1/119+22063973..22070268Zinc finger, C2H2 type family protein, expressed
LOC_Os09g38350OsAffx.18046.1.S1_at11/119+22082420..22084416AMP-binding enzyme family protein, expressed
LOC_Os09g38360OsAffx.6518.1.S1_at11/119+22089798..22090877hypothetical protein
LOC_Os09g38370OsAffx.30189.1.S1_at11/119+22091684..22094784Signal peptidase subunit family protein, expressed
LOC_Os09g38370OsAffx.30189.1.S1_s_at10/119+22091684..22094784Signal peptidase subunit family protein, expressed
LOC_Os09g38380OsAffx.30190.1.S1_at11/119+22095603..22096898Eukaryotic aspartyl protease family protein
LOC_Os09g38390NANA9+22098370..22100696PB1 domain containing protein, expressed
LOC_Os09g38400Os.54502.1.S1_at11/119+22104388..22106620expressed protein
LOC_Os09g38410Os.17501.1.A1_at5/119+22107282..22113256Major Facilitator Superfamily protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016208molecular_functionAMP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18046.1.S1_at--367--5311Chr09:22082996..22083020 (25 bp)
GAAGGACCTCAAGACGATGGAGAGC
LOC_Os09g38350
OsAffx.18046.1.S1_at--191--3231Chr09:22082987..22083011 (25 bp)
CAAGACGATGGAGAGCGTGCCCCGC
LOC_Os09g38350
OsAffx.18046.1.S1_at--1002--3931Chr09:22082930..22082954 (25 bp)
CGGCAGCAACGTCATGAAGGGATAC
LOC_Os09g38350
OsAffx.18046.1.S1_at--370--5051Chr09:22082928..22082952 (25 bp)
GCAGCAACGTCATGAAGGGATACTT
LOC_Os09g38350
OsAffx.18046.1.S1_at--192--1071Chr09:22082913..22082937 (25 bp)
AGGGATACTTCAAGAACCCGCGCGC
LOC_Os09g38350
OsAffx.18046.1.S1_at--462--6711Chr09:22082663..22082687 (25 bp)
GTTCGTGGCGCTGAAGCGGGAGTTC
LOC_Os09g38350
OsAffx.18046.1.S1_at--246--7271Chr09:22082603..22082627 (25 bp)
GTCCTTCTGCCGGAACAGGATGGCG
LOC_Os09g38350
OsAffx.18046.1.S1_at--420--10591Chr09:22082599..22082623 (25 bp)
TTCTGCCGGAACAGGATGGCGCACT
LOC_Os09g38350
OsAffx.18046.1.S1_at--743--4251Chr09:22082594..22082618 (25 bp)
CCGGAACAGGATGGCGCACTACATG
LOC_Os09g38350
OsAffx.18046.1.S1_at--558--991Chr09:22082587..22082611 (25 bp)
AGGATGGCGCACTACATGGTGCCGA
LOC_Os09g38350
OsAffx.18046.1.S1_at--559--8471Chr09:22082583..22082607 (25 bp)
TGGCGCACTACATGGTGCCGAGGAA
LOC_Os09g38350
Target Sequence 
GAAGGACCTCAAGACGATGGAGAGCGTGCCCCGCGACGGCGCCACCATGGGCGAGGTCGTGCTCCGCGGCAGCAACGTCA
TGAAGGGATACTTCAAGAACCCGCGCGCCACGGCGGACGCGTTCCGGGACGGGTGGTTCCTCACCGGCGACGTGGGCGTC
GTCCACCCGGACGGGTACGTGGAGATCAAGGACCGGTCCAAGGACGTGATCATCTCCGGCGGCGAGAACATCAGCAGCGT
GGAGGTGGAGGCGGCGCTGTACCAGCACCCGGCGGTGCGGGAGGCGGCGGTGGTGGCCATGCCGCACCCGCACTGGGGCG
AGACGCCGTGCGCGTTCGTGGCGCTGAAGCGGGAGTTCGCCGGCGCCGGCGAGGTGAGCGAGCAGGAGGTGGTGTCCTTC
TGCCGGAACAGGATGGCGCACTACATGGTGCCGAGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18046.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis